Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02669 ATGGAATCACCCGGTAACGAGCATGTGGTGGGTGGCGCAGAACCCAACGACGTCGTTACGCCCTTTTCCCACAGAGAAGAACCCCACAATTCCCAACCCCTCACCGGCGATGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAATATGGTGAGATCACGGATTCGGTCATCATGAAGGACCGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATAACGTACGCTGATCCCTCTGTGGTCGATAAAGTCATTGAGGATCCTCATATCATCAATGGCAAACAAGTTGAGATTAAGCGGACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACACGCTACGGCGAAGTTAAAGATCACCAAATAATGCGGGACCACTCCACCAACCGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCAGTTGATGATCTTCTGTCCATGGGAAACAAAATTGACTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCAGCACCTCCATCATCCAAGCGCTATAACGACTCTAGGTCTTCATACAGCAGTGGTGGATATGGAGATGCTTACGATGGATTTGGTGGCAGCTTTGGAATGGGGGGTGGTTATAGGTCAGGTGGTGCTTATGGTGGTGGTAGGGGTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGCCCGATGGGTCCGTATAGAGGAGATCCCTCCCTCGGTTATGCTGGCCGTTATGGAGGAAGCTTTAGCAGAGGGTACGATCTTGGTGGGTATGGTGGACCTAGTGAGAATTATGGAGCATATGGTGCAGGTGGGGGTTCTTCTGGTGGTGGTGGTGCCTACCAAAGTGGCTATGATGGAAACCTAGGAGGTGGATATGGAGGGGCTAGTGGAGGCCCCTTCTATGGGAGCAGTAGAGGAGGACACAGTGCCGGTCGATATCATCCTTATGGAAGATAA 1113 0.4897 MESPGNEHVVGGAEPNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIDFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSSGGYGDAYDGFGGSFGMGGGYRSGGAYGGGRGGAYGGYGSEFGGYGGYAGPMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGPSENYGAYGAGGGSSGGGGAYQSGYDGNLGGGYGGASGGPFYGSSRGGHSAGRYHPYGR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02669 370 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 31 370 - -
Pumo2g02669 370 MobiDBLite consensus disorder prediction 351 370 - -
Pumo2g02669 370 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 250 - -
Pumo2g02669 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Pumo2g02669 370 Gene3D - 42 121 IPR012677 -
Pumo2g02669 370 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Pumo2g02669 370 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 122 - -
Pumo2g02669 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 199 IPR000504 GO:0003723
Pumo2g02669 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Pumo2g02669 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Pumo2g02669 370 MobiDBLite consensus disorder prediction 204 226 - -
Pumo2g02669 370 Gene3D - 124 236 IPR012677 -
Pumo2g02669 370 SMART rrm1_1 131 204 IPR000504 GO:0003723
Pumo2g02669 370 SMART rrm1_1 43 114 IPR000504 GO:0003723
Pumo2g02669 370 SUPERFAMILY RNA-binding domain, RBD 128 234 IPR035979 GO:0003676
Pumo2g02669 370 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02669 Pumo-Chr2 58290716 58294345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02669 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 5.67e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02669 K12741 K14314 gmx:113001701 541.576