Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02654 ATGTACAATCCACCATTAACAAAAGCTACCTGTGAATTGAAGATCATGGCCTCTTCTTCTAGCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCGGATTGCATTTTTGCCCCATATTTCCCACCAGAAGAGCCACAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGCAAACTCCTGAACGAGGTGCAGCCCCATCAAAGAGAGGATGCTGTGAACTCTCTGGCCTATGAAGCCGAAGCAAGGATCAAGGATCCAGTGTATGGCTGTGTTGGGGCCATTTCAGTGCTCCAAAAACAAGTCCTTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATAGTTGCAACAATAATGAAATGCCAAACACTTCTCATCATGGAGGAGGGAGAAGGATGATGAGTGATGATGGAGGAGGTGGTTCCTCACTTGGTCACTCTCAATCTCATGGTTTCTATTATCCTTCTAATTGGAACAATGATCCTTGTGGAAATAGTGGCTACCCCTGA 555 0.4505 MYNPPLTKATCELKIMASSSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQVLRLQKELDATNADLIRYSCNNNEMPNTSHHGGGRRMMSDDGGGGSSLGHSQSHGFYYPSNWNNDPCGNSGYP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02654 184 Coils Coil 105 125 - -
Pumo2g02654 184 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Pumo2g02654 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 139 - -
Pumo2g02654 184 MobiDBLite consensus disorder prediction 135 161 - -
Pumo2g02654 184 Pfam Lateral organ boundaries (LOB) domain 26 122 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02654 Pumo-Chr2 58012448 58013936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02654 20 146 AS2 family AT3G27650 78.906 5.63e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo2g02654 LOB 1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02654 - - gmx:100788656 281.182