Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02653 ATGCCATTGCCAATGGACACTCCAAGCTCTCACTCTCTCTTCTCTCACATCGCCTCCAGAGAACTCTTCCGAGTTCGAAAACGACCTCGTATGGAGGGATTCGTCTCCGGCTTCAACGAAACTGGTCTCCTCGCCGTACAGCACAACGCCGAAGACACCATTCCCCTCTCTCTCTCCTTCTGCAAGACTTCAAAATTTGGACACATTCTCGCTGTGTCCGATGAGGACGGTTATGTCACCTTGTTCGATACTCGCCGCAACTTCCCTGTTACTTCAAACTTTGAAGAAGACTCAGAGAAAGTCAAGATTTGCGATTGGGTTACGCATCAGAATGCTGTTTTTGATACCTGTTGGATTAAGGAAGATACACAGATTCTCACTGCTTCTGGTGATCAAACCATAAAACTATGGGATGTTCAAGAACGGAAGTGTCTTGGAGTGTTGACTGGGCACACTGGAAGTGTGAAATCTATGTGTTCTCATCCAACTAATGCTGATATTGTTGTCTCTGCTTCTAGAGATGGGTCTTTTCGTATTTGGGACTTGAGATGCAAGTCCACTGCTAAGAGTAGGCGTGGAGAAGTTAGCATATGTTCAATGGGTGGTGTCAAAGGAGCACATATTTCATCTCAAGCAAGACGAACTAGGAGGGGAAAGGCTGCTTCAATGAGCATTACATCTGTTCTTTGTCTCAAGGACCAGGTTTCCATAGCAACTGCTGGGGCTGTGGATAGTGTGTTGAAGTTTTGGGATACCAGAAATTTGAAAAGTACTGTCACTCAGACATCTCCTTGTCCTCAGTCAACTGAAAAGCAAACATTACATGGAATTTCTAGCTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCAGCCTCTTGCATGGATAACCGAATTTATTTGTATAACACTCTTCAACTTGAAAAAGGGCCTTTAAAATCTTTTTCTGGGTGCCGAATTGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCATCGAACATAGTCAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGAAGGTTGACAAACCTCTGGAAGATCCTACTATTTTGAAAAGTCATGATGGCGAAGTTACAGCAGTTGACTGGTGTAGCTCTGAAATTGGCAAATTAGCAACTTGTTCTGATGATTTTACAGTTCGGACATGGAATAAAAACAGTTATGTCTCCAGAACACAATGTGCATCATCTGCCATCCGAAGAAGAGTAATGGCAATTCCTAGTACAGAGTGCAAAATGCTTTTAAATAATGGAAAAAGGTACTCTAAGACAAATGAAGATGCTTTTTTACCCGATGACACACTACACCCAATTACGTCACCCACTCCAATCACACCACCTAAAATGAATATATCTGAAGGCCATACGAACCAACTTTCCTCAGGATTATCCTCTGAAAAAACTCCAGAATCTGCTTTGAAGAGTCCCTCATCTGTATTGAACCCTCCATCCTCCCTAAAAAGAACTATTCGAGACTACTTTTTAGCATCTTCAAGAACCTTGTAG 1530 0.4235 MPLPMDTPSSHSLFSHIASRELFRVRKRPRMEGFVSGFNETGLLAVQHNAEDTIPLSLSFCKTSKFGHILAVSDEDGYVTLFDTRRNFPVTSNFEEDSEKVKICDWVTHQNAVFDTCWIKEDTQILTASGDQTIKLWDVQERKCLGVLTGHTGSVKSMCSHPTNADIVVSASRDGSFRIWDLRCKSTAKSRRGEVSICSMGGVKGAHISSQARRTRRGKAASMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSTVTQTSPCPQSTEKQTLHGISSLSQDESGLFLSASCMDNRIYLYNTLQLEKGPLKSFSGCRIESFFVKSAISPDASNIVSGSSDGNAYVWKVDKPLEDPTILKSHDGEVTAVDWCSSEIGKLATCSDDFTVRTWNKNSYVSRTQCASSAIRRRVMAIPSTECKMLLNNGKRYSKTNEDAFLPDDTLHPITSPTPITPPKMNISEGHTNQLSSGLSSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASSRTL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02653 509 Gene3D - 34 189 IPR015943 GO:0005515
Pumo2g02653 509 MobiDBLite consensus disorder prediction 436 492 - -
Pumo2g02653 509 SUPERFAMILY WD40 repeat-like 60 396 IPR036322 GO:0005515
Pumo2g02653 509 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Pumo2g02653 509 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Pumo2g02653 509 PRINTS G protein beta WD-40 repeat signature 168 182 IPR020472 -
Pumo2g02653 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 190 IPR001680 GO:0005515
Pumo2g02653 509 ProSitePatterns Trp-Asp (WD) repeats signature. 125 139 IPR019775 -
Pumo2g02653 509 MobiDBLite consensus disorder prediction 453 492 - -
Pumo2g02653 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 392 IPR001680 GO:0005515
Pumo2g02653 509 Pfam WD domain, G-beta repeat 358 392 IPR001680 GO:0005515
Pumo2g02653 509 Pfam WD domain, G-beta repeat 142 181 IPR001680 GO:0005515
Pumo2g02653 509 Pfam WD domain, G-beta repeat 108 138 IPR001680 GO:0005515
Pumo2g02653 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 106 140 - -
Pumo2g02653 509 SMART WD40_4 141 181 IPR001680 GO:0005515
Pumo2g02653 509 SMART WD40_4 40 83 IPR001680 GO:0005515
Pumo2g02653 509 SMART WD40_4 99 138 IPR001680 GO:0005515
Pumo2g02653 509 SMART WD40_4 352 392 IPR001680 GO:0005515
Pumo2g02653 509 SMART WD40_4 211 251 IPR001680 GO:0005515
Pumo2g02653 509 SMART WD40_4 307 348 IPR001680 GO:0005515
Pumo2g02653 509 SMART WD40_4 267 302 IPR001680 GO:0005515
Pumo2g02653 509 Gene3D - 190 420 IPR015943 GO:0005515
Pumo2g02653 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 350 IPR001680 GO:0005515
Pumo2g02653 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 183 - -
Pumo2g02653 509 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 7 505 - -
Pumo2g02653 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 147 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02653 109 357 U-box Gene Family AT1G04510 25.461 1.03e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02653 K11790 - gmx:100775857 935.636