Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02643 ATGATTCTGATACAAGCCCACCAGGAAGTCGGAAACAAATGGTCTAAAATTGTAAAGAGGTTGCCTGATAGGACTGAGAACACCATAAAAAACCATTGGAACACCACCAAGCGGCGCCAGAACTGCAAGAGGCATAACAAGAACAAACACGCCCCTTATGAAGGGTCAGTGCTTCATGCCTATGTCAAAAGTGTCACTGCTACTGAAGAAGCTACAAAAGTGCTCAAGAAATCAATAAGAAAGAAGAAAAAGGTGTTCTGA 261 0.4253 MILIQAHQEVGNKWSKIVKRLPDRTENTIKNHWNTTKRRQNCKRHNKNKHAPYEGSVLHAYVKSVTATEEATKVLKKSIRKKKKVF 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02643 86 CDD SANT 2 37 IPR001005 -
Pumo2g02643 86 SUPERFAMILY Homeodomain-like 2 44 IPR009057 -
Pumo2g02643 86 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 41 IPR017930 -
Pumo2g02643 86 Gene3D - 1 54 - -
Pumo2g02643 86 PANTHER MYB PROTEIN-RELATED 2 51 - -
Pumo2g02643 86 Pfam Myb-like DNA-binding domain 2 35 IPR001005 -
Pumo2g02643 86 ProSiteProfiles Myb-like domain profile. 1 37 IPR001005 -
Pumo2g02643 86 SMART sant 1 39 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02643 Pumo-Chr2 57857685 57857945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02643 2 65 MYB Transcription Factor Family AT4G18770 56.250 6.81e-19 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo2g02643 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02643 K09422 - ccaj:109801641 120.553