Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02641 ATGGCTGCCACAGCAACTGCATCTTCGGTGGGTCCACGGTATGCACCACCAGACCCGACACTCCCAAAACCATGGCGGGGTCTTGTTGATGGCAAGACTGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTCACCCAGTATGAGAGGCCCTCAAGCTCAGCTGCCCTGCCAAAGTCTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACAATCGTCTCAAGGGTTGCAACGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGATCAAACGAAGCTGGATCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTATAGTTCTCATAGTGTTTCAAATGGAACAAATGCTGCTGGCAATGTTAATTCTTCTGTCAGAGGTCATGGGGCTTCGGATGCTGGAGCTGGACTATCTCCCGAGTCTTATCGACATCGGCATGAAATATCTGTGACTGGAGACAATGTGCCTCCGCCCCTTGCATCATTTGGGTCTACTGGCTTTCCATCTGAGCTTCTGAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCTCAGGAAAAACCTTGGGGTATTTAATTCCGGCATTTATTCACCTCAAGCGCACTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCTAGAATTTCATGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTGGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACCTGGTGCTAGACGAGGCAGACAGGATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAAATTGTGAATGAGGTGCCTAATCGCAGGCAAACTCTAATGTTTACTGCAACATGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTAGTCAAGCCTGTTCAGGTGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTTTTGCCACCAATGGAGAAACAAAGAAGGCTGGAACATATTTTGCATTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAGATGTGTGATCAACTTGCTCGTAATCTGACACGTCAGTTTGGAGCTGCTGCTATTCATGGAGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAATCAGTTTCGAACTGGGAGGTCTCCTGTGCTAGTGGCTACAGATGTTGCTGCCCGGGGACTGGATATCAAGGACATTAGGGTGGTTGTCAATTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGAAGAGCTGGAGCCACTGGGTTAGCTTACACTTTCTTTGGTGACCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAACCAGAAGGTACCTCCAGAACTTCGTGATATGTCATCACGGAGTGGTGGTGGGATGGGCAGATCCAGACGATGGGGTTCTGGTGGACGAGGTGGACGTGGTGATTCTGGATATGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGAGGTAGTGATTCAAATTATGGAGGGAGGGGAACTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGACTCCCAGAGGTTAGTTTTGTTTACTATTAGTGATATTTTCTGTTTTATTTTGGAACATGTATTCCCTTTTTTTACTTACTTTACCAGAGGATTTGGGTTTTGTAGAAGGATTCTTAATGCTGCTGATCTACATGTTTTTGATGTTTTGTGGCACAGGAATGATAGGGGTCGGAGCCCAGACAAGGGATCTAGTTGGAGTGATCGCCACAAAGGCAGTGTCGTCAAGCGTGATCGAAGCCGCAGTCGTAGTCCTGACAGGGCTGCTGCACTAGCTCAACATTCCCAAGGCAGCTTTCACAAGGCAATGATGGAACGTGGTGGATGGGATAGTGATCGCAACAAGAGCTTCAACCGGGATCGAAGCCGCAGTCATAGCCCTCATAATAGACAGGAGAGGGCCCCAGCAGTTCGTGAACGTTCCCCAGTTTACAGTTTTCATCGATCAATGATGGGACAAGGTCAATCATCCCCTTCATCTCAACGGCAGCGGGCACGCAGTCCTCACCGAAACTCACTCCCCTCTCACGGTGGTGGTAGGTCTAATAATAGTCCTCCAAAAGAGTGGGGAGGATCTTACAATGGAGAAGTGGAGGAAGGGATGATTCCCGAGGAAGAAGGAATGATAGGTCAAGATGATCTCATATATCAAAATGTGGATTAG 2481 0.4663 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAALPKSSSVPSSSVQVQQSSQGLQRGRSPDFSDRYDRNGSGGSNEAGSRNNQSSKGGSYSSHSVSNGTNAAGNVNSSVRGHGASDAGAGLSPESYRHRHEISVTGDNVPPPLASFGSTGFPSELLREVQNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPAFIHLKRTGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPPMEKQRRLEHILHSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQKVPPELRDMSSRSGGGMGRSRRWGSGGRGGRGDSGYGGRNNDSGYGGRGSDSNYGGRGTASGRGGGRGFDYDSQRLVLFTISDIFCFILEHVFPFFTYFTRGFGFCRRILNAADLHVFDVLWHRNDRGRSPDKGSSWSDRHKGSVVKRDRSRSRSPDRAAALAQHSQGSFHKAMMERGGWDSDRNKSFNRDRSRSHSPHNRQERAPAVRERSPVYSFHRSMMGQGQSSPSSQRQRARSPHRNSLPSHGGGRSNNSPPKEWGGSYNGEVEEGMIPEEEGMIGQDDLIYQNVD 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02641 826 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Pumo2g02641 826 MobiDBLite consensus disorder prediction 663 826 - -
Pumo2g02641 826 Gene3D - 377 548 IPR027417 -
Pumo2g02641 826 Pfam Helicase conserved C-terminal domain 398 506 IPR001650 -
Pumo2g02641 826 SMART ww_5 20 53 IPR001202 GO:0005515
Pumo2g02641 826 MobiDBLite consensus disorder prediction 48 146 - -
Pumo2g02641 826 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Pumo2g02641 826 FunFam ATP-dependent RNA helicase RhlB 376 548 - -
Pumo2g02641 826 FunFam probable ATP-dependent RNA helicase DDX17 144 375 - -
Pumo2g02641 826 SMART helicmild6 426 506 IPR001650 -
Pumo2g02641 826 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Pumo2g02641 826 Gene3D - 17 65 - -
Pumo2g02641 826 CDD SF2_C_DEAD 386 515 - -
Pumo2g02641 826 SMART ultradead3 186 389 IPR014001 -
Pumo2g02641 826 MobiDBLite consensus disorder prediction 537 600 - -
Pumo2g02641 826 MobiDBLite consensus disorder prediction 91 134 - -
Pumo2g02641 826 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 372 IPR014001 -
Pumo2g02641 826 CDD WW 22 51 IPR001202 GO:0005515
Pumo2g02641 826 MobiDBLite consensus disorder prediction 663 691 - -
Pumo2g02641 826 MobiDBLite consensus disorder prediction 711 743 - -
Pumo2g02641 826 MobiDBLite consensus disorder prediction 1 27 - -
Pumo2g02641 826 MobiDBLite consensus disorder prediction 48 81 - -
Pumo2g02641 826 MobiDBLite consensus disorder prediction 754 795 - -
Pumo2g02641 826 Pfam DEAD/DEAH box helicase 191 361 IPR011545 GO:0003676|GO:0005524
Pumo2g02641 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 523 IPR027417 -
Pumo2g02641 826 Gene3D - 145 376 IPR027417 -
Pumo2g02641 826 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Pumo2g02641 826 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 116 545 - -
Pumo2g02641 826 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Pumo2g02641 826 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02641 Pumo-Chr2 57834494 57839746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02641 165 544 Eukaryotic Initiation Factors Gene Family AT3G19760 33.943 3.05e-67 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02641 K12823 - gmx:100786511 1162.9