Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02634 ATGGACAAAAAACCATGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGACCATGGACCATGGAAGAAGACTTGATCTTGATAAACTATATTGCAAATCACGGTGAAGGTGTTTGGAACTCTTTAGCCAAAGCTTCTGGTCTTAAACGTACGGGAAAGAGTTGTCGACTCCGTTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGAAACATTACACCCGAGGAACAGCTTTTGATCATAGAACTTCATGCAAAGTGGGGTAATAGGTGGTCCAAAATTGCAAAGCATCTTCCGGGAAGAACTGACAATGAGATTAAGAACTTTTGGAGAACTAGGATCCAGAAGCACATTAAGCAAGCTGAGACTTCACAACAACATGGTAATTCAGAGAATAATGAACGTCAAGCAAGCACTAGCACTAGCAATGTGTCCACCATGGCACATCCAAATGAGACTTTCTCTCCACCCTCATACCAAGGAACTTTGGAGCCATTTCCAACTCAATTCCCTACAATCACTGATCAATCAAGTTGCTGTACCAATGACAACAACAACAACAACGTTAACTATTGGAGCATGGAGGACATCTGGTCGTCTATGCAATTACTCAATGGGGATAATTAA 627 0.4195 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAETSQQHGNSENNERQASTSTSNVSTMAHPNETFSPPSYQGTLEPFPTQFPTITDQSSCCTNDNNNNNVNYWSMEDIWSSMQLLNGDN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02634 208 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pumo2g02634 208 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pumo2g02634 208 SMART sant 15 65 IPR001005 -
Pumo2g02634 208 SMART sant 68 116 IPR001005 -
Pumo2g02634 208 Gene3D - 16 68 - -
Pumo2g02634 208 FunFam Myb transcription factor 16 68 - -
Pumo2g02634 208 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 175 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo2g02634 208 MobiDBLite consensus disorder prediction 121 162 - -
Pumo2g02634 208 CDD SANT 73 112 IPR001005 -
Pumo2g02634 208 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pumo2g02634 208 MobiDBLite consensus disorder prediction 119 162 - -
Pumo2g02634 208 Gene3D - 73 144 - -
Pumo2g02634 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pumo2g02634 208 FunFam Myb-related protein 305 73 142 - -
Pumo2g02634 208 CDD SANT 18 63 IPR001005 -
Pumo2g02634 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pumo2g02634 208 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Pumo2g02634 208 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02634 Pumo-Chr2 57701816 57705602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02634 4 208 MYB Transcription Factor Family AT3G01530 58.294 1.12e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g02634 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02634 K09422 - gmx:100305972 392.504