LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g02629	ATGGAGCATGTTTTGGAGAAAAGGTTTCCTCTTAATGCAGAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGCGTTAGTGCCTCCGTATACAGGGCTCTTTGCGTTCCACTCAATGAGATAGTTGCCATCAAGGTTCTCGATCTAGAGAAGTGCAATAATGATTTGGATGGCATTCGAAGAGAGGTACAGACCATGAGCTTGATTGATCATCCAAATGTTTTACAGGCACATTGCTCTTTTACTGCTGGACACAATCTATGGGTTGTGATGCCATACATGGCTGGGGGGTCTTGCCTTCATATAATGAAATCTTCATATCCTGAGGGTTTTGAAGAGCCTGTTATTGCTACATTATTGCATGAAGTTCTCAAAGCTCTTGTCTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCTGGGAATATTCTGCTTGATTCTAATGGTGCAGTCAAACTAGCTGACTTTGGTGTGTCAGCATGTATGTTTGATACCGGAGATAGGCAACGTTCAAGAAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTCATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACGGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCGCCTATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGGCTTTCAAAGAGTTGATTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCAAGTTCAGAAAAGCTTTTAAAACACCACTTCTTTAAACAAGCACGTGGCACCAAATATCTAGCTCGCACCATTCTAGAAGACCTTGCTCCTTTAGGAGATCGTTTTAGAATGCTGAAGGCTAAAGAGGCGGATTTACTGGTGCAGAACAAGGCTCTTTATGAGGATAAGGATCAATTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAGGATTTGAAAAGTCAAGCTGCTCTTATTCAAGATGATGACATACCTAATGCAGAAGAGCCACAAAGGGATAAGAAGCAAAAAGACAGATTGGATGACTTCAAAGTTTCTGCAGAGGGGCTATCAGCTGGAGCAGCTAATCATTCAGATGATGCACCCACGCAGGACAAGGAGGATGGATTCAACAATCTTCAGGATTTGGAGGGTTCACTTGCTTCATTTCCTAGTAAACCTCTACAAGCACTTAAAGGATGTTTTGATATGTGTGAGGATGACGTTAATAACAGCAGTCCAAGAGATTTAGATCATGATTATGGAAGAATTGACAATGAAAGTTCTGGGCCAAGTACTTCAGTACAACAAAATGCTATCAGTCAGCAAAAAAAATTTCCAAGTGGTTCTTTGCTACCTGATAATTTTCTTTTTCCCAAAAAGGTTGTTACTGATGGGGACAGGGATTATCTACAAACAAAATATTCTTCAGAAAGGAATCATAGTGGTCCATTGCAATATCGGCAGAAGAGAGACACCAACAACCTTCCATTGGTTGATGATACATCAGATGGAGCATTTGTCCAGCGTAGGGGGCGGTTTAAGGTCACACCGGCAGATCTCAGTCCAATGGGTCCTTCAAACAGCACATCTGGCCCACTTGTTAGTCCTACGAGTCCACCAAATCAAAATTTCATGGTTGCCGCTATTCTTCCATCACTGCAGTGCATCTTGCAACAGAACGGTTTGCAGAGGGAAGAGATTATTAAATTAATAAAGTATGCAGAGCAATCTTCTGGCAAGAATAATACAGAATCAGTGGAGGCAGGGACAGTTGATGGTTTGCAGGCTCCACCTGCAACAACTAGGGAGCGAGAGCTGCATTTTCAGGTGAATCAACTCCAACAGAGCATTGGAAGCCTTGTTGAGGAATTGCAAAGACAAAAGATGAAAAATGTTCAGTTGGAAAAACAGTTGAGCAGTATGGTTAACAAAGTGGAAAAGTGA	2022	0.413	MEHVLEKRFPLNAEDYKLYEEVGEGVSASVYRALCVPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLQAHCSFTAGHNLWVVMPYMAGGSCLHIMKSSYPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKELIATCLVKDPKKRPSSEKLLKHHFFKQARGTKYLARTILEDLAPLGDRFRMLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNAEEPQRDKKQKDRLDDFKVSAEGLSAGAANHSDDAPTQDKEDGFNNLQDLEGSLASFPSKPLQALKGCFDMCEDDVNNSSPRDLDHDYGRIDNESSGPSTSVQQNAISQQKKFPSGSLLPDNFLFPKKVVTDGDRDYLQTKYSSERNHSGPLQYRQKRDTNNLPLVDDTSDGAFVQRRGRFKVTPADLSPMGPSNSTSGPLVSPTSPPNQNFMVAAILPSLQCILQQNGLQREEIIKLIKYAEQSSGKNNTESVEAGTVDGLQAPPATTRERELHFQVNQLQQSIGSLVEELQRQKMKNVQLEKQLSSMVNKVEK	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g02629	673	Gene3D	Phosphorylase Kinase; domain 1	5	92	-	-
	Pumo2g02629	673	MobiDBLite	consensus disorder prediction	501	525	-	-
	Pumo2g02629	673	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524
	Pumo2g02629	673	SUPERFAMILY	Protein kinase-like (PK-like)	13	278	IPR011009	-
	Pumo2g02629	673	MobiDBLite	consensus disorder prediction	451	472	-	-
	Pumo2g02629	673	Coils	Coil	636	673	-	-
	Pumo2g02629	673	FunFam	serine/threonine-protein kinase BLUS1 isoform X1	97	330	-	-
	Pumo2g02629	673	MobiDBLite	consensus disorder prediction	547	563	-	-
	Pumo2g02629	673	FunFam	Serine/threonine-protein kinase BLUS1	5	93	-	-
	Pumo2g02629	673	Pfam	Protein kinase domain	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g02629	673	MobiDBLite	consensus disorder prediction	357	377	-	-
	Pumo2g02629	673	MobiDBLite	consensus disorder prediction	437	472	-	-
	Pumo2g02629	673	MobiDBLite	consensus disorder prediction	498	563	-	-
	Pumo2g02629	673	SMART	serkin_6	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g02629	673	ProSiteProfiles	Protein kinase domain profile.	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g02629	673	Gene3D	Transferase(Phosphotransferase) domain 1	97	323	-	-
	Pumo2g02629	673	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	7	654	IPR047173	GO:0043539
	Pumo2g02629	673	MobiDBLite	consensus disorder prediction	352	404	-	-
	Pumo2g02629	673	CDD	STKc_OSR1_SPAK	14	277	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g02629	Pumo-Chr2	57592066	57607279	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g02629	1	670	MAP Kinase Kinase Kinase Kinase	AT5G14720	67.006	0.0	926

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Pumo2g02629		Pkinase	3.2e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g02629	K08835		-	gmx:100778837	1264.6