Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02608 ATGCATGGGTGCGGTGGTGACCAGTCGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGTAGCCATCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTTTTCAAGCCACCCAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTAACATTTGATAAAGAAGAAAGTCCGAGTTTAGAAGTGAATTGGCTATACCGACCTGCTGATTTGAAACTTGCTAAAGGAATTGTACTGGAAGCTGCTCCAAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATTTCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAATTGTTTATGGTGGCTAACTGATAAGGATTACCTTAATGAACGACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAACATCAACACAGTCATTAAAATCTGGTTCTGATAACGTTCAAAATAGTTCTTCCTTTGGTGCACAGGGTAAGGGAAAAAAGAGAGAGCGGAGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGGTAGAGGATGGAGATTCTGGTCAATTTAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAGACTGGTACAGCTTATGCAACCTGATAGTGGTGATAAAAAAATAGATTTGGCAGGGCGGATAATGCTTGTCGATGTAATTGCACTTACGGACCGGTATGAATGTCTAGGCAGGTTTGTACAACTCAGGGGTTTGCCTGTGTTGGATGAATGGCTGCAGGAGGTCCACAAGGGCAAAATTGGTGATGCAAATATGCCTAAAGAAAGTGATAAGTCTGTTGAAGATTTTTTGTTAGCTTTACTTCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAAACCTGTAATGTTGGAAAGTCTGTTAATCATTTACGCACCCACAAAAATTCTGAAATTCAGAGGAAAGCTAGGAGTTTAGTGGACACATGGAAGAGACGTGTGGAAGCTGAAATGAATATGACTGATTCGAAGTCTGGTTCAAACCGTGCCGTTTCTTGGCAAGCAAAGCCAGCAAATGCTGAGTCTCCTCATGTTGGAAATAGGAAAACAGGAGGATCCTCTGATAATGTTGCGAAGAGCTCTTCAATTCAACCCTCAATATCTAAAAATTCCCAATCTAAGTTAAGTTCTGGAGAAGCATTGTCCAAGTCCTCTTCATCTCCTGGCTCAACTAAATCAATGACTACCTCAGCGGGCAGTAACTCAAAAGATCAAAACAGTAAAGTCTTGGTTGGAGCCGCAACATCAGATCTACCGCTGACACCTATCAAGGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATATCTTGTTCTAGTGAACATGCTAAAACTATTGGTTCTTGCAGGGAAGATGCGAAGAGCTCGACTGCAGTGTCAACGAGTGTGGGCAAAATTCCTGGGGGTGCGTCTCGAACTCGCAAGTCAAGCAATGGTCTACATGGGGCTGGTGTTGCAGTAGGTCAGAAGGAGCACAGCTCTGCAAAAAATTCAACTAGAAATTCACCTTCTGATAAAGTTTCACCAACTCGAGTCTCCCATGAAAAATCTGCTGACCAGCCCCTTACCGATCAAGGGAATAATCAGCGATTGATTCTCAGGTTGCCAAACACTGGTCGCAGTCCTTCAAGGGGAGCTAGCGGCTGGCTCTTTTGA 1935 0.4367 MHGCGGDQSKHNRHMWPVPANATTVAIDSSPSQFICKDGRKIRAGDCALFKPPRDSPPFIGIIRKLTFDKEESPSLEVNWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNERQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSGSDNVQNSSSFGAQGKGKKRERSDQGSDSSKKERLFKVEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVERLVQLMQPDSGDKKIDLAGRIMLVDVIALTDRYECLGRFVQLRGLPVLDEWLQEVHKGKIGDANMPKESDKSVEDFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARSLVDTWKRRVEAEMNMTDSKSGSNRAVSWQAKPANAESPHVGNRKTGGSSDNVAKSSSIQPSISKNSQSKLSSGEALSKSSSSPGSTKSMTTSAGSNSKDQNSKVLVGAATSDLPLTPIKEERSSSSSQSQNNSISCSSEHAKTIGSCREDAKSSTAVSTSVGKIPGGASRTRKSSNGLHGAGVAVGQKEHSSAKNSTRNSPSDKVSPTRVSHEKSADQPLTDQGNNQRLILRLPNTGRSPSRGASGWLF 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02608 644 MobiDBLite consensus disorder prediction 218 249 - -
Pumo2g02608 644 MobiDBLite consensus disorder prediction 189 217 - -
Pumo2g02608 644 Gene3D - 24 257 IPR043151 -
Pumo2g02608 644 MobiDBLite consensus disorder prediction 584 637 - -
Pumo2g02608 644 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 641 - -
Pumo2g02608 644 MobiDBLite consensus disorder prediction 436 502 - -
Pumo2g02608 644 MobiDBLite consensus disorder prediction 408 644 - -
Pumo2g02608 644 MobiDBLite consensus disorder prediction 410 425 - -
Pumo2g02608 644 MobiDBLite consensus disorder prediction 512 571 - -
Pumo2g02608 644 SMART BAH_4 40 155 IPR001025 GO:0003682
Pumo2g02608 644 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 309 418 IPR035441 -
Pumo2g02608 644 CDD TFIIS_I 329 405 - -
Pumo2g02608 644 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 273 408 IPR035441 -
Pumo2g02608 644 Pfam BAH domain 42 147 IPR001025 GO:0003682
Pumo2g02608 644 Pfam TFIIS helical bundle-like domain 355 404 IPR017923 -
Pumo2g02608 644 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Pumo2g02608 644 MobiDBLite consensus disorder prediction 178 252 - -
Pumo2g02608 644 ProSiteProfiles TFIIS N-terminal domain profile. 321 407 IPR017923 -
Pumo2g02608 644 SMART TFS2_5 327 406 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02608 Pumo-Chr2 56948294 56951284 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pumo2g02608 BAH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02608 - - gmx:112998769 1158.67