Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02590 ATGTCAGAAAGCATGTATCCTAGGTTGTTTTTTAACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAAAAAGATGGTTACTTGAGCTACTCACCACCCCTTTTGTCTTCATCTTCTTCACCCCCATACCCTCTTGGTGCTGCTTTCCACAAAGAATCATCATTGCCTTCTTCAACACCACCACCACCATCATCTGGCACTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGCCTCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCTTCTTCTTCTGCATCAGCTCAATCCAACAGGCACCAAGAACTTTCCACATCTGATGCTCTCCAGAGGCAGCTTCAGCAGCTCTTCCACCTCCATGACTCTGGCTTGGATCAAGCTTTCATTGATGCTCTTCCTGTTTTTCAGTACAAGGAGATTGTGGGGTTGAAAGAGCCTTTTGACTGTGCTGTTTGTCTGTGTGAGTTTTCTGAGAAGGATAAGCTCAGGTTGTTGCCTATGTGCAGCCATGCCTTTCACATCAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTTACTCCAGGATTTTCCATTGAGAACCCTATATTTGATTTTGATGATCTGAGGGAGGATGAAGGGTGTCCTTGTAATGTGGAGAATGGATTCAATACTAGACAGAAAACAGTTGTGGTTGAAGAAAGTGGGGAGAAAGGTGTTTTCCCTGTGAGGCTTGGGAAATTCAGGAAGCTGAATGTGGAGGGCGGGGAGAGTGAAGTGGGAGAGACAAGTAGCAGCAATTTGGATGCAAGAAGGTGTTTCTCAATGGGGTCTTACCAATATGTGGTTGGGAATTCAGACCTCAGGGTGGCCTTGAACCATGAAAGTAAAGGTCAAATCACAAGGCTCACCAAAGGAATGGAACTTGATGATGGGAAGCTTTCAGTGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGCTGTGGCCAAAGAAGGGGAAATTACCTACTTCTTTGGATCCTCAAATGGGCATGCCAATGCCATCTTATCTCAATAGAGATTTACATGGGATGAGGGAAACAGAAGGGGCATGA 1188 0.4461 MSESMYPRLFFNHTHLKMAWVKHQIQQKDGYLSYSPPLLSSSSSPPYPLGAAFHKESSLPSSTPPPPSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASAQSNRHQELSTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSIENPIFDFDDLREDEGCPCNVENGFNTRQKTVVVEESGEKGVFPVRLGKFRKLNVEGGESEVGETSSSNLDARRCFSMGSYQYVVGNSDLRVALNHESKGQITRLTKGMELDDGKLSVEGDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPTSLDPQMGMPMPSYLNRDLHGMRETEGA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02590 395 Pfam Ring finger domain 164 207 IPR001841 -
Pumo2g02590 395 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Pumo2g02590 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 212 IPR013083 -
Pumo2g02590 395 SMART ring_2 165 206 IPR001841 -
Pumo2g02590 395 FunFam RING-H2 finger protein ATL46 127 212 - -
Pumo2g02590 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 68 358 - -
Pumo2g02590 395 CDD RING-H2_EL5-like 164 207 - -
Pumo2g02590 395 SUPERFAMILY RING/U-box 144 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02590 Pumo-Chr2 56722145 56725063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02590 70 365 C3H Transcription Factor Family AT2G18650 42.683 6.83e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02590 - - gmx:100806337 653.669