Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02581 ATGACAGTTATTGTAACAGTGGTGTTAATATTTGTTGGATTTGTGTTCCTGGTCCTACTTCATGTTTGTTTTTCGGAGAGACTCTCTAGGAGAGGATCAATGGTTGAGAGGGGTGCAAATGGGGCCAGAAGCATGTCCATAGATGACTTGGAGAAGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCATCACAGGAGATAAGTGCAGATTGTTACCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTGGACACATGGCTTCTAAGTACACCCATATGTCCAATTTGCAGGTGCAATGCTCATTCTCATAGTGGAAACCAAGTTGAAGGTAACAATGACTACTTTGTTGCACCAAATAGTGGGTCTAGGGAGAGCCAAACTACCACAGGAGTAAGTCAGCAACATGACAATATGGTATTGGTGCAGTTGGGAGAAAGCCTAGAAAATGGTCCATCCACAAATGTTGACATAGAAAATCCAACATTAGGAAGTCACAACTTGGTCAGAGAGGAGTAG 561 0.4349 MTVIVTVVLIFVGFVFLVLLHVCFSERLSRRGSMVERGANGARSMSIDDLEKLPCYDYVAKGNTSSPVDCAVCLESLITGDKCRLLPMCKHSFHAQCVDTWLLSTPICPICRCNAHSHSGNQVEGNNDYFVAPNSGSRESQTTTGVSQQHDNMVLVQLGESLENGPSTNVDIENPTLGSHNLVREE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02581 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 150 - -
Pumo2g02581 186 SMART ring_2 70 111 IPR001841 -
Pumo2g02581 186 SUPERFAMILY RING/U-box 69 122 - -
Pumo2g02581 186 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Pumo2g02581 186 FunFam RING-H2 finger protein ATL2K 45 118 - -
Pumo2g02581 186 Pfam Ring finger domain 69 112 IPR001841 -
Pumo2g02581 186 MobiDBLite consensus disorder prediction 164 186 - -
Pumo2g02581 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 121 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02581 Pumo-Chr2 56632741 56633394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02581 50 114 C3H Transcription Factor Family AT2G18650 51.515 3.97e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02581 - K15692 gmx:102667575 320.857