Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02579 ATGATCATGGAGCTCTCCGATTCCACCGGCGGCGACCGCAACCTCAACGCGCCGCCGCCACCGCCGCCGCAGCACCACCACAACCAAGACGCGCGCTCTGGCCTCGGAATCGACCTCAACGAGATCCCTTCGCCTTCCTCTTCCTTCCCCGAAACCCTACCGGACTCCGTCGCCTTCGACGTCGTCCGCGCCTATCACGACAACCCCGCGCCGCCGCCGGGAGGTCCCGCCGCCCTCCCCCGCGGCGGCTCCTCTCCATGCGCCGCCTGCGCAAAGCCCTCCCCCGCCGCCGGGAGTCACCACCACCTCGTCGTGTGCGACGGCTGCGAGCGCAGTTTCCACCTCGCCTGCTCCGGAATTCGCGGCGGAGGCAGGCAGGCGGCGAACCTCGACGAGTGGGTCTGCGGCGAGTGCGTCGCCGCCGGAGTGAAGAGTAAGCGGTGGCCCTTGGGAGTGAAACAGCTTCTCGATATCAATGCTCCGCCGCCGAGCGACGCCGAAGGCGACGAGGAGGTGCAGGATTCGAGAAAGCACACTCTGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAGTGACGAATTCAAACTTCAACAATGGGATTGCTATTGGCTTCCAAAAGGCATCTGAAGTTTTGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATACTCAGTCAATTACTAGAAGCTTTGAGGAGGCTCTTAGAGATTTTATATCTGAACGGCGTGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTGAGCAACTCTGAAGTGTATGCAGTTTACTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTGGCTTGTTATTTGGGGCTAACGTCTGGCTACAACTCTATTGAATCTGAGCTAAGAAATGAGAGGTCTCTCCCTTCTTTAGGTGGGCTTCTATCCAGAAAAAGAAAGTCAACAAGAACTACAGTAGCCAACGGTTCTATGGAAAAGCGGGGAACCTTGATGAATAGTAATTGTAAGGATCCTCCTTCTGATGGTTTAAATGTGGAATGTGCTAGTGCTAGGGAGAATATCCCAAAACCCTCTGAAATTGGAAGAAAAGAGGATTGCCACTCCTGCACTCAACAATATGCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGGAAAGTTGATGGGAGACCTTCATATTATGATGTTAATCTTATCTGTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGCTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGTGTTTCTGTTCAGAATTTCCTGTTCCAGTTGGGTCAACCATACTCTCCATGTCAAAACTTTGTCAAGTTGTGAGTCAAACCAATGAAGAAGGTGAGAGAAAAACTAATGGTAGTATGGATTTAGATGATGATGAAAGTCTCCAAATGATGCTTTTAGACCCTTGTGTACCAACGGAAAATGATATTCTAAGTTGCTTTGCAAGCTGCTTGATTGAGGCACGTGATACTCATACATCAGATGTATTACACCCTGTTGCTAGTTCCGTTCAAGATAATGCTAGAAATTCATTAGCTGATAACATAGGGTTTAATGATGGCATTGGTGAAATTTTGGTGGAAGAGCGGTCGTCATTCTCTGCATGGAGAGTTATTTCTCAAAAGCTAGTTAATGCTTGCAAGGATATCTGCAAACAGAAAGGAACTCTCAAGTTCTATTGTAACCATGTTGATAAATGGGATTTAAGGAATGGAAAAAGTGATACATGCTTTAATTCATTGGATAAATTCTGTGGTTCTGTTGGTTCTGTTGGCATCCCAGACGTAATTTATGCAGACAATGATCTGGAAGGTATCTACGAGGCATTGGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCTGGTGTCCAAGACTCTTTGCAGTATGAACTTTTAAATAATAGAAATAATAGCTCGTCATTGCCAACAGTAGAAAATGGTTTCTTAGTGGTTGAATGGAGAGATGGATCAAAATATCAGGAAGAAGCAGTTCAAGCTTTATATGGAAGGTCCAAGAAGGTGATTGAAAAAGGCATTAAGGAAGATCGTCATCCACCACTTGGGAAGCCAGTATGCTCTAGGGCTCCTAGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAAAGCGATTTCATGAAACTCTGGACCTGAAAGAACCATTGACATTAGATGAACTTGAGAAAGAACTTATTAACCCTTGGTTTGATGGATCAGATTTTCTTGTTGAGAAATCTGAGAGGGACATGGATGAAAGTCAAGTTTTAATTTCCCAAGGAGCTGATGGTAATTGTAGACCATTATTGTCCCCAAGATGTGAAGCTGATCCATCTGGTTCCATAGAAAGTTCTCATGCATTTATTCAAGTGGAAACAGAAGCAATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCTTTCACATATGCCAGATGCTTTGGTGTAGCTTTGACCAAGGCTCATAATTCATTGCTAAGAGTGCTAATAGGTGAATTGCTGTCAAAGGTGGCTGCCCTGGTAGATCCAAATTCTGAACCTGGAGAATCACGAACAAGACGGGGAAGAAGGAAAGATATGGATAGTGCACTTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGTAGATATATGTTGGCTTTTTTGTCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCTCGCGAAAGTGGTAAAGTATTTCGTTGCTTACGTGGTGATGGTGGTTTGCTGTGTGGTTCTCTTACTGGTGTGGCTGGGATGGAAGCAGATGCACTGCTGCTTGCTGAGGCTACAAAGAAAATTTTTGGTTCTTTAAGCAGAGAAAATGATGTACTGACCATGGAAGAAGAAGAGTCTAATGCAAAGGGTGCTTCTGAAAAAAATTTGGCAAATGATGGTAGTGTTCCTGAATGGGCACAGATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGCACCCGAATCAGAAAGTGTGTTTATGATTCTCTGGAAAAGAATCCACCAGAATGGGCAAGGAAAATACTGGAGCATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTAAAGTTGGCGGTGAAGGATTGCAATCAAATCCCAATAAAGGACAGAAAAAGAAAATTGTTATATCAATTTCTGACATCATCATGAAACAATGTCGCATTGTATTACGTCGTGCCGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTAATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTAGCTCGTCCTCTTGACTTCCGCACTATTGACCTAAGATTAGCTACCGAAGCTTATGGTGGATCTCATGAAGCTTTTCTAGAGGATGTTCGTGAGCTGTGGAACAATGTCCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGAACTGGCTGAAAAATTATCCCAAAACTTTGAATCATTATATAATGAGGAGGTTGTCACCTTTGTCCAAAAATTTGTGGAGTATGCTAAACTGGAATGCTTAAGTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAACAAATGAGATTCCGAAGGCCCCTTGGGATGAGGGAGTATGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTGAATCCTCCACTTGCGAGGATCCCTGAGGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTACACAGATTGTTGGCAAACGTCGAAGTAAAAAATTCCAGGGAGAAGTCAACTCTCTATACTTGGAATCTCTAACTCATTTATCAGCTGTAATTGAAGAAAAAGAATACTGGGAGTACAGCATGGGCGAGAGAACTTTCCTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTGATTCGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGCTGAGTTACATCAGAAATTGCGTGCACACTCTGCAGAGTGGAAAAGCCTGAAAACTAGAGAGGATATTTTATCCACAAAAGCTGCCAAAATTGATACATTCTCACTAAATACTGCTGGAGAAGTTGGTCTTAAGGAAGGGTTTGCTTCTTTATTATCAAATACTGGTAAATGTCTGGTCCAGCCACATTCTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGGTTACCAAAGAGAAGTATAGGTTTGATAGTGTTGATAAAAGCATATCTGTAACAAATTCAGATTCTGATAGCCAAAATATGAATTCCATAGATGTAGAGGGACAGTTTAGAAATGTCTCTGGTGCTGTGGAGTCTCAATGTACTGACAAATCCCCCAAGTCTTTTCCTTCGCCAAATCATATGTCTCAAGAAAGAAATGGTGCTGGTGGAGCAGCTCATGTCCAGGGTAACAACCAGAAATGTGAGGGAAAGGACATACCTACTCCTGTGTCTTACCAGCAAGGAGGAGTGCCTGTTGATGTTCCTCAGATTGCTGTGAATGAGTCCGAACCCTACCACCTTGAGCTCAATGCCATCAAACGTGATATTTCACTATTGCAGGACTCCATAACTAGTGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATTTTTGGGTATTGATTCCATTGGTCGATTGTACTGGGCTTCGGCTTTGCCCGGAGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGCATTGCTGCATGGAAGAGGAATGTCATTTAGCAGAGACTATGTAGAGAAGTTTTCTGTTCTGCAGCATCGTGCACTATCTGACAAGGATTTCTCTTTAATGTCTCAGCCTAGTAATCCTTTGGGCAATAGTTCACCATGGATTGCTTATGAAACTGATACTGAAATTGAAGAGCTCTTAGGTTGGCTGGATGATAGTGACCCTAAAGAAAGAGAACTGAAAGATTCCATTATGCTGGGGCCAAAATCAAGATTCCAAGAGTTTATTAATGCACAGACTGAAGATCAGGTCGAGGACCAAGGACATATTTCTATGCCAAGAAATAGAGAGAAACAAGTATCTAATTCTCTTGTTACTAAGGCAACTTCCTTGCTGGAAAAGAAATTTGGTCCCTTTGTTGAGTGGGATAATATTGAAGTGTTGAAGAAGCAAAATAGGAAGGCCAGAACAACTAATGATGAAAAGTTGTATAGGTGTGAGTGCCTAGAACCCATATGGCCTTCTAGGAAACACTGCACATATTGTCACAAAACTGTTGCGAGTGATGTTGAATTTGATGGACACTATGATGGCAAGTGTAATGCAGGTCTTCCAGCTGTAGAGAAGAGTAAGGATAAAAATGGATCTTCTAAAGGAAGAGGGAACTTAAAATGTGATACCTCACATGAGAAATTCAGAGCTGATGCAGAAACAGCTGTAACCTCAGTTAGTGGGTCTTCTAAGCTTGGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATAGGTCTTATTGGTTCAGATGGTATCCCATCCTTTGTTCCTTCTGTATCTCCTTTTGTTAGTGAATATACACTCTCAGCTCAAAAGGATGAAAGCATTGTTGGTGGTGTGTCCAAAGCATCAGAAAGCCGGGATTCTCAGGGAAACACTGATGGAACTGACACATGTCTTGACCATAAATCAGGCAATTCTACTGGAAAGTTGGCTGCAAATGAAGGCAATAAATCCAACAAATCATCCTCGAGAGAAAGAGATGGGAAATTCTCTTTTTGTAGTCCTGCTTCAGTTATGGGAGCCAATGGCTGCTGTGTGGTTCCTTCGCCTTCATTGAGACCGTTAGTTGGAAAAGCTTCTCACATTTTGAGGCAGCTGAAGATAAATCTACTTGATATGGATGCTGCACTTCTGGCAATTGCTCTAAGACCATCAAAGGCTGAGTCATACAGAAGACAGGCTTGGCGTACATTTGTAAAATCTGCAAAGACTATATATGAGATGATTCAGGCAACATTTACACTGGAGGATATGATTAAGACAGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCCCTGCGCATATACTCCCTTGATTTAGCCATTATATATGAGAAAATGCCCAATTCAAGCCTTACTGACAGCTCTGAACCTTCTGCCATAGCGGAACCAAAACCACTGATGAATGTGGATGCAGAAAAATCCAAAGCAAGCCGGAAGTCAACCAGGAAAAGGAAGGAATCAGATGGTTGA 6612 0.4303 MIMELSDSTGGDRNLNAPPPPPPQHHHNQDARSGLGIDLNEIPSPSSSFPETLPDSVAFDVVRAYHDNPAPPPGGPAALPRGGSSPCAACAKPSPAAGSHHHLVVCDGCERSFHLACSGIRGGGRQAANLDEWVCGECVAAGVKSKRWPLGVKQLLDINAPPPSDAEGDEEVQDSRKHTLGDNSFGANPFGAPVTNSNFNNGIAIGFQKASEVLTHAVRVGFEDILNHTQSITRSFEEALRDFISERRGVLEEGWRVEFRQSVSNSEVYAVYCAPDGKIFDSVYEVACYLGLTSGYNSIESELRNERSLPSLGGLLSRKRKSTRTTVANGSMEKRGTLMNSNCKDPPSDGLNVECASARENIPKPSEIGRKEDCHSCTQQYADGLPLQFKDFFVLSLGKVDGRPSYYDVNLICPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCFCSEFPVPVGSTILSMSKLCQVVSQTNEEGERKTNGSMDLDDDESLQMMLLDPCVPTENDILSCFASCLIEARDTHTSDVLHPVASSVQDNARNSLADNIGFNDGIGEILVEERSSFSAWRVISQKLVNACKDICKQKGTLKFYCNHVDKWDLRNGKSDTCFNSLDKFCGSVGSVGIPDVIYADNDLEGIYEALGKWLEQDRFGLDVEFVQEVLEQLPGVQDSLQYELLNNRNNSSSLPTVENGFLVVEWRDGSKYQEEAVQALYGRSKKVIEKGIKEDRHPPLGKPVCSRAPSELIGDIFQAWELLKRFHETLDLKEPLTLDELEKELINPWFDGSDFLVEKSERDMDESQVLISQGADGNCRPLLSPRCEADPSGSIESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTKAHNSLLRVLIGELLSKVAALVDPNSEPGESRTRRGRRKDMDSALPAKRTKLNMLPINELTWPELARRYMLAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLTMEEEESNAKGASEKNLANDGSVPEWAQMLEPVRKLPTNVGTRIRKCVYDSLEKNPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLAKVGGEGLQSNPNKGQKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLATEAYGGSHEAFLEDVRELWNNVRVAFGDQPDLVELAEKLSQNFESLYNEEVVTFVQKFVEYAKLECLSAEMRKEVDDFIESTNEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERTQIVGKRRSKKFQGEVNSLYLESLTHLSAVIEEKEYWEYSMGERTFLLKFLCDELLNSSLIRQHLEQCAELSAELHQKLRAHSAEWKSLKTREDILSTKAAKIDTFSLNTAGEVGLKEGFASLLSNTGKCLVQPHSAVDNPSNFGVFVDSLPSEEVTKEKYRFDSVDKSISVTNSDSDSQNMNSIDVEGQFRNVSGAVESQCTDKSPKSFPSPNHMSQERNGAGGAAHVQGNNQKCEGKDIPTPVSYQQGGVPVDVPQIAVNESEPYHLELNAIKRDISLLQDSITSVVSQLLKLSVRREFLGIDSIGRLYWASALPGGRSRIVVDASAALLHGRGMSFSRDYVEKFSVLQHRALSDKDFSLMSQPSNPLGNSSPWIAYETDTEIEELLGWLDDSDPKERELKDSIMLGPKSRFQEFINAQTEDQVEDQGHISMPRNREKQVSNSLVTKATSLLEKKFGPFVEWDNIEVLKKQNRKARTTNDEKLYRCECLEPIWPSRKHCTYCHKTVASDVEFDGHYDGKCNAGLPAVEKSKDKNGSSKGRGNLKCDTSHEKFRADAETAVTSVSGSSKLGSRLIKFSNEESTCPFNFEDICSKFVTNDSNKELVREIGLIGSDGIPSFVPSVSPFVSEYTLSAQKDESIVGGVSKASESRDSQGNTDGTDTCLDHKSGNSTGKLAANEGNKSNKSSSRERDGKFSFCSPASVMGANGCCVVPSPSLRPLVGKASHILRQLKINLLDMDAALLAIALRPSKAESYRRQAWRTFVKSAKTIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKMPNSSLTDSSEPSAIAEPKPLMNVDAEKSKASRKSTRKRKESDG 2203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02579 2203 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 241 308 IPR001739 GO:0003677
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 892 907 - -
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 887 907 - -
Pumo2g02579 2203 PANTHER OS02G0192300 PROTEIN 21 2199 - -
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 1530 1551 - -
Pumo2g02579 2203 SUPERFAMILY FYVE/PHD zinc finger 1261 1324 IPR011011 -
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 2182 2203 - -
Pumo2g02579 2203 Gene3D - 385 492 - -
Pumo2g02579 2203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 144 IPR013083 -
Pumo2g02579 2203 SMART PHD_3 86 139 IPR001965 -
Pumo2g02579 2203 SMART PHD_3 1274 1320 IPR001965 -
Pumo2g02579 2203 SUPERFAMILY Bromodomain 1109 1229 IPR036427 GO:0005515
Pumo2g02579 2203 SUPERFAMILY DNA-binding domain 242 295 IPR016177 GO:0003677
Pumo2g02579 2203 ProSiteProfiles Zinc finger PHD-type profile. 84 141 IPR019787 -
Pumo2g02579 2203 ProSiteProfiles Zinc finger PHD-type profile. 1272 1322 IPR019787 -
Pumo2g02579 2203 Gene3D - 1116 1239 IPR036427 GO:0005515
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 2163 2203 - -
Pumo2g02579 2203 CDD Bromodomain 1120 1227 - -
Pumo2g02579 2203 CDD PHD_SF 87 138 - -
Pumo2g02579 2203 Gene3D - 246 301 - -
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 1 52 - -
Pumo2g02579 2203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1260 1343 IPR013083 -
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 1530 1574 - -
Pumo2g02579 2203 Coils Coil 1393 1413 - -
Pumo2g02579 2203 CDD PHD1_Lid2p_like 1274 1319 - -
Pumo2g02579 2203 ProSitePatterns Zinc finger PHD-type signature. 87 138 IPR019786 -
Pumo2g02579 2203 ProSitePatterns Zinc finger PHD-type signature. 1275 1319 IPR019786 -
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 1974 2025 - -
Pumo2g02579 2203 Pfam Bromodomain 1163 1218 IPR001487 GO:0005515
Pumo2g02579 2203 Pfam PHD-finger 87 139 IPR019787 -
Pumo2g02579 2203 Pfam PHD-finger 1274 1320 IPR019787 -
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 159 182 - -
Pumo2g02579 2203 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1354 1398 IPR028942 -
Pumo2g02579 2203 ProSiteProfiles FYR domain FYRN motif profile. 384 437 IPR003888 GO:0005634
Pumo2g02579 2203 SUPERFAMILY FYVE/PHD zinc finger 86 150 IPR011011 -
Pumo2g02579 2203 MobiDBLite consensus disorder prediction 1979 2016 - -
Pumo2g02579 2203 Pfam Methyl-CpG binding domain 242 295 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02579 Pumo-Chr2 56578957 56593907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02579 29 2203 C2H2 Transcription Factor Family AT3G01460 44.759 0.0 1721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo2g02579 Bromodomain 6.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02579 K22768 - gmx:100820223 3959.07