Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02578 ATGGAGTCTGGACGGATTTTCTTTGATGCCTCTGCTTCTCGCGGGAACAACATGCTCTTCCTCGGCAACACTGAACTCGCTTTTCGAGCAGGGAGATCTATGATGAGCATGGAGGAAGCCTCAAAGAGGCGACCTTTCTTCACCTCACCGGATGAACTGTATGATGAGGAGTATTATGAGAAGCAGATGCCGGAGAAGAAGCACCGCCTCAGTTCTGAACAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAGCTGGAGCCTGACAGGAAGACCCAGTTGGCTAAGAAGCTGGGATTGCAGCCCAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACTAAGCAACTTGAAAGGGATTATGATGTTCTCAAGTCTTCATATGATACCCTACTTTCATCCTATGATTCAATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAACCAATGTATGACAAGAAAGTTGATCCACTTCCAGTAGAAGATATGGCTGCAATTTTCAGCACAAGGGTGGAGGACCACCCGAGTAGTGGGAGTGTTGGAAGTGCAGTGGTGGACGAGGGAAGTCCACAGGTGGTTGTTGACAGTGTTGATTCATACTTTCCAGCTGACAACTATGGTGGATGTGTGGGCCCGGTCGAAAGGGTTCAGTCAGAGGAGGAGGATGGGAGTGACGATGGGAGGAGTTACCTGGATGTGCTTGTGGTATCTGAAACTGAGCACCAAAACCATGAGGAAGGAGAGGCATTGGGTTGGTGGACTAATATGTATTATGTTGGATAA 855 0.4819 MESGRIFFDASASRGNNMLFLGNTELAFRAGRSMMSMEEASKRRPFFTSPDELYDEEYYEKQMPEKKHRLSSEQVHLLEKSFEEENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSEVVSLNEKLQVQAKEVPEEPMYDKKVDPLPVEDMAAIFSTRVEDHPSSGSVGSAVVDEGSPQVVVDSVDSYFPADNYGGCVGPVERVQSEEEDGSDDGRSYLDVLVVSETEHQNHEEGEALGWWTNMYYVG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02578 284 CDD homeodomain 66 122 IPR001356 GO:0003677
Pumo2g02578 284 FunFam Homeobox-leucine zipper protein HAT5 59 123 - -
Pumo2g02578 284 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355|GO:0043565
Pumo2g02578 284 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Pumo2g02578 284 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Pumo2g02578 284 SMART HOX_1 63 125 IPR001356 GO:0003677
Pumo2g02578 284 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Pumo2g02578 284 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Pumo2g02578 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 209 IPR045224 GO:0003700
Pumo2g02578 284 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Pumo2g02578 284 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Pumo2g02578 284 Coils Coil 141 168 - -
Pumo2g02578 284 Gene3D - 59 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02578 Pumo-Chr2 56575528 56577979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02578 1 277 Homeobox Transcription Factor Family AT3G01470 57.801 1.46e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo2g02578 Homeodomain 8.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02578 K09338 - gmx:100797836 526.939