Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02552 ATGAAGAGGGCAAGGGATGATATCTACTCTGCCTCTGCCTCTCAATTCAAACGCCCCTTTGCTTCATCACGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGTGGAGGAGGAGGGGGAGGAGGCGGCGGCGGAGGGGGAGGTGGCAATGGAGGTGGTGTCGGCGGGGGAGCAACTACTTCCCAGAAGCTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGATATGTTTCAGGACCAAAGAGAGAAGTACGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACCGACACTGCTGGTGTCATAAAAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAATACTTTCCTGCCAAAGGGTTATGAGATAACGCTTGACGAGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAACGGTTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAATATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCATTGCAGCGCTTTAATGAGCGGAGTTCTATGGCCCCTATGATTCGCCAAATGCCAGCAGACAAGGCACAACGTTATCGACGAGACAGGCTTCCTTCTCATGATCGTGATCGTGATATGAGTGCTGAACGCCCTGAGCTGGATGATGACAAAACAATGATGAACATACACAAGGAGCAGAGGAAGCGTGAAAGTAGGGATAGGAGAATGCGTGATCAAGATGAGAGAGAACTTGATCTTGATAACAACAGAGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGAATGGCTTCTGACATTACTTCTTATGAAGACAAAGATACCTTAAAGAGAATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAAAAGTTGAGCAGTTCTGATGATTACCAAACATTCTTGAAGTGCCTGCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCGGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCGCTGTCTACTGATGCTCATTTATCAAGATCATCAAAGTTGGAGGACAAAGACAAAGAGCACAAGCGTGACATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGTACTCCCAGCTATCGGCTTTTGCCTGCAGATTATCCAATTCCTACTGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCCGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCAGCTGCTAAAAAAGCAGAGGAATTGTACAATAACATCAATGAAAATAAAATCAGTGTGGAGACTCTGAACCGTGTTGAAGATCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTATATGGTGATCATGGTCTGGACGTTATAGACATATTGCGTAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCTCTTGATCATCGTAGCTTCTACTTCAAACAGCAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTTACTGAGATTAAAGAAATTAAAGAAAAGCAGCAGAAAGAGGATGATATTATTCAGTCTATTGCAGCTGGAAATAAACAGCCTCTAATTCCACATCTGGAATTTGAATATTCTGATGTTGGGATTCATGAAGACCTGTATAAACTTGTTTGTTATTCATGTGAGGAGTTGTTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCGATGCTTGGTGTTCCTTCCCAATCTCATGGGACAGAAAGGGCTGAGGACAGAAAAAGTGGGCATAATGTTTGCAATTTTGGTGCACCAAATATAGGGGGTGACGGAAGTCCCCGTGGAGACTCTATTTCAATAAATTCAAGGGTACCAAAACCTGATAAGAATGAAGCTGATGGTAGAGTAACTGAAGTGAAGAATGTTCACCGGACTACTGTGGCATCCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACTTGTTAGTAGAGATGATCCATTAATGGATAAAGGGCAGAAAAATGTAGAATGCAATGATAAAGCTTCCGGATTTAGCAAACAATTTACCTCTGATGAACAAGGAGCTAAAAACAATGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAAAACTAACTTAGATGTATCTCCAGGCCGTGCCCTTACTCCATCACGACATACTGATGTTGATGACTCTGTAGCCAAGTCCCAGGGTGTTAATGTACCTTTGGTAGAGGGATGCGACATGGCAACTCCAGTACCAGTGGCCAATGGTGTTCTAAGTGAGAGCAGTAAAGTTAAAACTCACGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAAATGGTGACTCTGAGGAGGATAACTTTGTTGCTTATGGAGATTTAAATGTGCAGTCAATGGCTAAGTCAAAGCACAACATTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGGGAAGATCATGAAGAGGAGGAAGATATAGAACATGATGATGTTGATGGAAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTATGAGAGGATCTTATCAGCAAAAACACATTCAATGAGTGCAGAAATGAAATGGAAAGCAAAAGATGCTAGTTCACCAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTGCCGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCATATGTGTTATTCACATTGGACAAGTTAATATACAAATTGGTCAGACAGCTTCAAACTGTCGCAACCGATGAGGTAGACAATAAGCTTCTCCAACTATATGAATATGAAAAGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGACAATATATATCGTTTACAATGTTCCTCTACCCCCTCGCGACTGTCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCCGTATCTATTGATCCAAATTTCTCTTTTTATCTGCACAATGATTTTCTGTCTGTCTTTCCCAACAAAAAGGAGCCCCATGGCATTATACTGCATAGAAACAAACGCAAATATGGAAACTTGGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCATCCAAGATTTCTTATGTTCTTGACACACAAGACTTTTTCTTCCGACCGAGAAAGAAAAGACGAACGCCGTCAGGGACGACAACTTCCCAGTTTCGCAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCATTTGTATCTTCATCATGA 4209 0.4096 MKRARDDIYSASASQFKRPFASSRADSYGQNQVPGSGGGGGGGGGGGGGGNGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIKRVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNERSSMAPMIRQMPADKAQRYRRDRLPSHDRDRDMSAERPELDDDKTMMNIHKEQRKRESRDRRMRDQDERELDLDNNRDLNLQRFPDKKKSVKKAEGFGMASDITSYEDKDTLKRMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLSRSSKLEDKDKEHKRDMDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKKAEELYNNINENKISVETLNRVEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDVGIHEDLYKLVCYSCEELFSSKELLNKIMRLWSTFLEPMLGVPSQSHGTERAEDRKSGHNVCNFGAPNIGGDGSPRGDSISINSRVPKPDKNEADGRVTEVKNVHRTTVASNDKENGSVGGELVSRDDPLMDKGQKNVECNDKASGFSKQFTSDEQGAKNNVSIAIRGENSLNKTNLDVSPGRALTPSRHTDVDDSVAKSQGVNVPLVEGCDMATPVPVANGVLSESSKVKTHDESAGPCKIEKEEGELSPNGDSEEDNFVAYGDLNVQSMAKSKHNIERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTHSMSAEMKWKAKDASSPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDNKLLQLYEYEKSRKPGKLNDSVYHANAHVILHEDNIYRLQCSSTPSRLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPNKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKIACSSSKISYVLDTQDFFFRPRKKRRTPSGTTTSQFRRDREERFRKLLAFVSSS 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 989 1071 - -
Pumo2g02552 1402 Coils Coil 556 576 - -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 217 314 - -
Pumo2g02552 1402 SUPERFAMILY PAH2 domain 61 132 IPR036600 GO:0006355
Pumo2g02552 1402 ProSiteProfiles PAH domain profile. 147 217 IPR003822 GO:0006355
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 252 314 - -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 945 966 - -
Pumo2g02552 1402 PANTHER SIN3B-RELATED 63 1260 IPR039774 GO:0003714
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 442 462 - -
Pumo2g02552 1402 ProSiteProfiles PAH domain profile. 63 133 IPR003822 GO:0006355
Pumo2g02552 1402 Pfam Sin3 family co-repressor 485 577 IPR013194 -
Pumo2g02552 1402 FunFam Paired amphipathic helix protein SIN3 348 421 - -
Pumo2g02552 1402 SUPERFAMILY PAH2 domain 353 419 IPR036600 GO:0006355
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 827 848 - -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 1047 1062 - -
Pumo2g02552 1402 Gene3D Paired amphipathic helix 146 218 IPR036600 GO:0006355
Pumo2g02552 1402 Pfam C-terminal domain of Sin3a protein 1119 1366 IPR031693 -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 782 812 - -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 991 1010 - -
Pumo2g02552 1402 Pfam Paired amphipathic helix repeat 170 214 IPR003822 GO:0006355
Pumo2g02552 1402 Pfam Paired amphipathic helix repeat 86 130 IPR003822 GO:0006355
Pumo2g02552 1402 Pfam Paired amphipathic helix repeat 372 416 IPR003822 GO:0006355
Pumo2g02552 1402 SMART hdac_interact2seq4b 483 583 IPR013194 -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 1 61 - -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 942 976 - -
Pumo2g02552 1402 ProSiteProfiles PAH domain profile. 350 419 IPR003822 GO:0006355
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 1011 1031 - -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 441 462 - -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 890 915 - -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 15 34 - -
Pumo2g02552 1402 MobiDBLite consensus disorder prediction 217 241 - -
Pumo2g02552 1402 Coils Coil 444 464 - -
Pumo2g02552 1402 Gene3D Paired amphipathic helix 69 131 IPR036600 GO:0006355
Pumo2g02552 1402 Gene3D Paired amphipathic helix 348 421 IPR036600 GO:0006355
Pumo2g02552 1402 FunFam Paired amphipathic helix SIN3-like protein 146 217 - -
Pumo2g02552 1402 FunFam Paired amphipathic helix protein Sin3 69 131 - -
Pumo2g02552 1402 SUPERFAMILY PAH2 domain 144 216 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02552 Pumo-Chr2 55472375 55482834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02552 48 166 WRKY Transcription Factor Family AT4G12020 50.000 4.43e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo2g02552 Sin3a_C 4.4e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02552 K11644 - gmx:100807181 2525.35