Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02546 ATGCTCTCTTCATTCAAATTTGTTACTTGTTTCTTTTGTCTTGGTAAAGCCATAGATTGCGGTGGGAAGAATGTTACACAAATCATCACTGTTGGTCGATATGGCAAAGTAGCATTTAGAACAATTCAAGCAGCCATTGATTCTATAAAGAGTAACAATGAACGATGGGTCAAGATTCACATAAACGCCGGCTTATACATAGAAAGGGTTAATATTCCCCTAGAAAAACCATGCATCATTTTAGAAGGAGAGGGTAGCAAGAACACAATTATAAGTTTCGGGGACCATCAAGGAACAAGCAATAGCTCTACATTCACTTCATCTCCATCTAATGTGGTTGTGAGTGACATTACTTTCAAGAACTCATATGTTAATGGACCAGCAGTGGCAACGAGTGTATATGGAGACAAATCTTTCTTCTTTAAGTGTAATTTTATAGGTTATCAAGACACTTTGTTTGATGCAATTGGACGTCATTACTTTAAAGATTGCTACATTGAAGGTGCAGTGGACTTTATTTTTGGTGCTGGACAATCTTATTACGAGAATTGTTGGATAAACACTGTGGGGCCAGGTTCTGTCACAGCTCAAGCACGAGATTCATCAGATGACCCAAGTGGTTTTGTATTTGAAGGGGGTTCCATCACAGGGAATGGTAAAGTGAATTTAGGAAGAGCATGGTGTGCTTATTCTAGAGTTATATTTCATGGAACATATTTTTCTTCCATTGTGACTCCTCAAGGATGGAATGCTTGGAGTTATGTTGGCCAAGAGTAA 777 0.3835 MLSSFKFVTCFFCLGKAIDCGGKNVTQIITVGRYGKVAFRTIQAAIDSIKSNNERWVKIHINAGLYIERVNIPLEKPCIILEGEGSKNTIISFGDHQGTSNSSTFTSSPSNVVVSDITFKNSYVNGPAVATSVYGDKSFFFKCNFIGYQDTLFDAIGRHYFKDCYIEGAVDFIFGAGQSYYENCWINTVGPGSVTAQARDSSDDPSGFVFEGGSITGNGKVNLGRAWCAYSRVIFHGTYFSSIVTPQGWNAWSYVGQE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02546 258 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 23 256 - -
Pumo2g02546 258 Pfam Pectinesterase 29 253 IPR000070 GO:0030599|GO:0042545
Pumo2g02546 258 SUPERFAMILY Pectin lyase-like 28 254 IPR011050 -
Pumo2g02546 258 Gene3D - 22 258 IPR012334 -
Pumo2g02546 258 ProSitePatterns Pectinesterase signature 2. 166 175 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02546 Pumo-Chr2 55330989 55333361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02546 7 258 Carbohydrate Esterase AT2G19150 43.382 5.89e-72 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02546 - - var:108336510 350.903