Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02545 ATGCGTGTGGATCAGAACCAAACTAGTGTTGACACGAAGAAGAAAAATGGGTCTATTCGATCCATTTTCATGCATGCTGATAGGTTAGATTGGTTTTTCATGGTTTTGGGTTTCTTTGGAGCCATGGGTGATGGCTTCACCACCCCTATCACGCTGTACATCACGAGCAGAATCATGAACAATATTGGTGATGTTTCAAAAATGACACCAACTACTTTCATCCACAACGTCAATAAGTATTCACTGGGGTTGTCATACTTGGCTACTGTATCCTTTTTTGCTTCCTTCCTCGAGGGGTATTGTTGGACAAGAACAGGTGACAGACAAGCTGCAAGAATGAGAGTTAAGTATTTAAAAGCAGTGCTTAGACAAGATGTAGCATACTTTGATTTGCATGTCACAAGCACGTCTGAGGTCATCACCTGTGTCTCTAGTGATAGCCTCGTTATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAACTTTTTTAGGTTCCTTGGAAGCTACATAGTGGCTTTTGCTTTGTTTTGGAGATTGGCCATTGTGGGGTTCCCTTTTGTGGTTCTTCTTGTGATCCCTGGTTTAATTTATGGGAAGACTATGATGAGGTTGGCTAGAAAGATCAGAGAAGAGAGTAATAAAGCTGGTACCATAGCAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGTTGGGGAAAGCAAGACCATAAATGCTTTCTCTGAAGCTCTACAAGGGTCTGTTAAGTTGGGACTGAGACAAGGCTTAGCTAAAGGTTTAGCCATTGGAAGCAACGGTGTTGTGTTTGCTATATGGGCTTTCATGTGCTATTATGGAAGCAGATTGGTCATGTACCATGGTGTTAAAGGAGGGACTGTGTTTGCAGTTGGATCAGTCATATGTATTGGGGGATCGGCATTAGGTGCTAGTTTATCTGAGTTGAAGTGCTTCACAGAAGCATGTGCTGCTGGGGAACGCATAATGGAAATGATAAAAAGAGTTCCCATGATTGATTCTGAAAATATGGCTGGGGAGATTCTAGAGAAGGTCTCAGGGGAAGTGGAATTTGATCATGTGAAATTTGTGTACCCATCAAGGCCAGACAGTGTTATTCTGAATGATTTCTGCCTAAAGATTCCAGCAGGGAAAACAGTGGCATTGGTTGGAGGAAGTGGCTCAGGAAAATCCACTGTGGTGTCACTCTTGCAAAGATTTTATGACCCAATTGAGGGAGAGATATTTCTTGATGGTGTGGCTATTAATAGGTTGCAACTCAAGTGGTTTAGGTCTCAAATGGGTTTGGTTAGCCAAGAGCCTACTCTGTTTGCAACCAGCATTAAGGAGAATATACTTTTTGGAAGAGAGAATGCCACTGAGGAAGAGATTGTTGAGGCTGCCAAAGCTGCCAATGCTCATGATTTCATTTCACAGTTGCCACGAGGATACAATACCCAGGTTGGAGAGAAAGGAGTTCAAATATCAGGGGGACAGAAGCAAAGGATTGCTATTGCACGAGCAATAATAAAAAAACCTCAAATCCTTCTTTTGGATGAGGCAACAAGTGCACTAGATTCTGAATCTGAACGCAAAGTGCAAGAAGCTCTTGATAAAATTACAGTGGATCGAACTACCATTATCATAGCTCATCGTTTATCCACCATAAGAGATGCATATGACATTATTGTTTTGGAGAATGGGAAGATCATGGAGATGGGTTCTCATGACGAGCTCATTCAAAATGATAATGGGCTTTACACATCTCTTGTTCATTTCCAACAAGTAGAGAAATCCAAAAATGATACACTTTTTCACCCTCCTATTTTAAATGGAGACATGCAAAACACAAGTAGTCATATTGTAAGTCATTCTATCTCCACAAACTCAGTGGCTCAATTTTCTCTTGTTGACGAAGATATTACTAAAAAAGTCAAAGATGATCAAAAGCTCTCGCCTCCTTCATTTTGGAAATTGTTAGCATTGAATCTCCCTGAGTGGAAACAAGCATGTTTGGGGTGTTTGAATGCAATGTTATTTGGTGCAATTCAGCCACTATATGCATTTGCAATGGGCTCCTTGATATCAATTTTTTTCCTCACAGATCATGATGAGATTAAAAGAAAAATTGTAATCTATTGTTTATTTTTTATTGGATTAGCTGTGTTCTCATTGGTTGTTAATATCATCCAACATTATAGTTTTGCTTACATGGGAGAATACTTGACCAAAAGGGTGAAAGAAAGAATGCTTTCCAAGATACTCAATTTTGAAGTTGCATGGTTTGATCATGACGGAAATTCCACCGGTGTTGTTTGCTCTAGACTAACTAAAGAAGCCAATATAGTGAGGTCTTTAGTGGGAGATAGAATGGCTCTAGTGGTGCAAACCATTTCTGCAGTGGTAATAGCTTTTACCATGGGCCTAATCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCCATTATCATAGCATGTTTCTACACAAGACGTGTCCTTCTCAAGAGCATGTCTAGTAAGGCCATCAAGGCCCAAGATGAGAGTAGCAAGATAGCTGCTGAAGCTGTTTCCAACCTCAGAACCATCACAGCATTTTCTTCTCAAGATAGAATCCTCAAAATGCTTGAAAAGGCCCAAGAAGGCCCAAGTCGTGAAAGCATTCGACAATCGTGGTTTGCTGGTGTTGGTCTTGCATGTTCCCAAAGCCTTACATTTTGCACTTGGGCTTTGGACTTTTGGTATGGAGGCAAGCTTGTGTTTCGTGGGTTCATAAATGCCAAAGCATTGTTTGAGACCTTCATGATCTTGGTGAGCACAGGTAGGGTCATTGCAGATGCTGGTAGCATGACCAATGACCTTGCTAAAGGGGCTGATGCTGTGGGCTCAGTTTTTGCAATCTTAGATAGGTACACAAAGATTGAGCCTGATGACATAGATGGGTACAAGCCTGAAAAACTAACAGGGAAAATAGAGCTTCATGATGTCCATTTTGCATACCCAGCTAGGCCCAATGTAATGATCTTCCAAGGCTTCTCAATCAAAATAGATGCAGGCAAATCAACAGCATTGGTAGGACAAAGTGGGTCTGGCAAATCAACAATAATAGGCTTAATAGAGAGATTCTATGATCCACTGAAAGGGACTGTGAACATTGATGGTAGAGACATAAAATCATATCATCTTAGGTCACTAAGGAAGCACATTGCTCTTGTAAGCCAAGAGCCAACATTGTTTGGTGGGACCATAAGGGAAAATATTGCATATGGGGCATCTAATAAGGTTGATGAAACTGAGATCATAGAAGCAGCAAGGGCAGCAAATGCTCATGATTTCATTGCAAGCCTAAAGGATGGTTATGACACATGGTGTGGAGATAGAGGAGTGCAACTCTCTGGGGGTCAAAAGCAAAGAATTGCAATAGCTAGAGCCATATTGAAGAACCCAGAAGTGTTGTTGTTGGATGAAGCCACCAGTGCCCTTGATAGCCAATCAGAGAAATTGGTGCAAGATGCTCTAGAAAGGGTGATGGTGGGGAGAACTAGTGTGGTGGTGGCTCACAGGTTAAGCACAATACAAAACTGTGATCTAATTGCTGTGTTAGATAGGGGAAAAGTGGTGGAGAAAGGGACCCACTCATCTTTGTTGGCTCATGGACCAAGTGGAGCTTATTACTCTTTGGTAAGTTTACAAAGAAGACCAACAAAACACGAATGTTAA 3735 0.4112 MRVDQNQTSVDTKKKNGSIRSIFMHADRLDWFFMVLGFFGAMGDGFTTPITLYITSRIMNNIGDVSKMTPTTFIHNVNKYSLGLSYLATVSFFASFLEGYCWTRTGDRQAARMRVKYLKAVLRQDVAYFDLHVTSTSEVITCVSSDSLVIQDVLSEKVPNFLMNFFRFLGSYIVAFALFWRLAIVGFPFVVLLVIPGLIYGKTMMRLARKIREESNKAGTIAEQAISSIRTVYSFVGESKTINAFSEALQGSVKLGLRQGLAKGLAIGSNGVVFAIWAFMCYYGSRLVMYHGVKGGTVFAVGSVICIGGSALGASLSELKCFTEACAAGERIMEMIKRVPMIDSENMAGEILEKVSGEVEFDHVKFVYPSRPDSVILNDFCLKIPAGKTVALVGGSGSGKSTVVSLLQRFYDPIEGEIFLDGVAINRLQLKWFRSQMGLVSQEPTLFATSIKENILFGRENATEEEIVEAAKAANAHDFISQLPRGYNTQVGEKGVQISGGQKQRIAIARAIIKKPQILLLDEATSALDSESERKVQEALDKITVDRTTIIIAHRLSTIRDAYDIIVLENGKIMEMGSHDELIQNDNGLYTSLVHFQQVEKSKNDTLFHPPILNGDMQNTSSHIVSHSISTNSVAQFSLVDEDITKKVKDDQKLSPPSFWKLLALNLPEWKQACLGCLNAMLFGAIQPLYAFAMGSLISIFFLTDHDEIKRKIVIYCLFFIGLAVFSLVVNIIQHYSFAYMGEYLTKRVKERMLSKILNFEVAWFDHDGNSTGVVCSRLTKEANIVRSLVGDRMALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQDRILKMLEKAQEGPSRESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFRGFINAKALFETFMILVSTGRVIADAGSMTNDLAKGADAVGSVFAILDRYTKIEPDDIDGYKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVNIDGRDIKSYHLRSLRKHIALVSQEPTLFGGTIRENIAYGASNKVDETEIIEAARAANAHDFIASLKDGYDTWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDRGKVVEKGTHSSLLAHGPSGAYYSLVSLQRRPTKHEC 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02545 1244 FunFam ABC transporter B family member 4 349 604 - -
Pumo2g02545 1244 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524|GO:0016887
Pumo2g02545 1244 ProSitePatterns ABC transporters family signature. 1136 1150 IPR017871 GO:0005524|GO:0016887
Pumo2g02545 1244 Pfam ABC transporter transmembrane region 675 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo2g02545 1244 Pfam ABC transporter transmembrane region 34 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo2g02545 1244 CDD ABC_MTABC3_MDL1_MDL2 359 597 - -
Pumo2g02545 1244 Gene3D ABC transporter type 1, transmembrane domain 22 965 IPR036640 GO:0005524|GO:0016020
Pumo2g02545 1244 Gene3D - 986 1243 IPR027417 -
Pumo2g02545 1244 Gene3D - 349 598 IPR027417 -
Pumo2g02545 1244 SUPERFAMILY ABC transporter transmembrane region 660 980 IPR036640 GO:0005524|GO:0016020
Pumo2g02545 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 35 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo2g02545 1244 SMART AAA_5 1023 1216 IPR003593 GO:0016887
Pumo2g02545 1244 SMART AAA_5 386 572 IPR003593 GO:0016887
Pumo2g02545 1244 Pfam ABC transporter 1015 1164 IPR003439 GO:0005524
Pumo2g02545 1244 CDD ABC_MTABC3_MDL1_MDL2 996 1236 - -
Pumo2g02545 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1236 IPR027417 -
Pumo2g02545 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 996 1233 IPR003439 GO:0005524
Pumo2g02545 1244 CDD ABC_6TM_Pgp_ABCB1_D2_like 663 979 - -
Pumo2g02545 1244 FunFam ABC transporter B family member 4 986 1242 - -
Pumo2g02545 1244 Pfam ABC transporter 377 526 IPR003439 GO:0005524
Pumo2g02545 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Pumo2g02545 1244 PANTHER ABC TRANSPORTER B FAMILY 9 686 IPR039421 -
Pumo2g02545 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 597 IPR027417 -
Pumo2g02545 1244 CDD ABC_6TM_Pgp_ABCB1_D1_like 34 332 - -
Pumo2g02545 1244 SUPERFAMILY ABC transporter transmembrane region 23 340 IPR036640 GO:0005524|GO:0016020
Pumo2g02545 1244 FunFam Putative ABC transporter B family member 8 639 984 - -
Pumo2g02545 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 680 961 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo2g02545 1244 FunFam ABC transporter B family member 1 21 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02545 Pumo-Chr2 55240947 55315627 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02545 18 1237 Calmodulin-binding Proteins AT2G36910 44.302 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02545 K05658 - gmx:100808241 2062.73