Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02538 ATGGATCGCAGCAACGCGTCTTCCTCTTCGCTCCTTCTGTTGAGCTTGTTGGGGTTTCAGCTTTTCTTCTTCTTTGCTTCGTCGCAGGGCGAAGACTACGTGACATGTCTCCGTGGCATCAAGGACTCTGTCTCCGACCCTCAGAATCGGCTCTCCAATTGGCGGTTCGACAACACAACCGTAGGTTTCATCTGCGACTTCGTGGGTGTGTCTTGCTGGAACGTGAGGGAGAACCGTGTCCTAGGTTTGGACCTCCAAGACTTCAAGCTTTCGGGTAAGATCCCCGAGGCTTTGAAGTACTGTGGGAAGAGCCTTCAAAGGTTGGATCTTGCTTCAAATTCTTTTTCTTCAGAGATCCCACATGAGATCTGTAGTTGGATGCCTTTTTTGGTCTCAATAGATTTGTCAAATAACCAACTTTCTGGGCCTATCCCCCCTACAATTGTGAATTGTTCTTATTTGAATGAGTTGGTGCTTTCAAATAACCAGCTCTCTGGCTCAATTCCCTTTGAGTTTGGGAGCTTAGGTAGGCTCAAGAAGTTTTCTGTGGCCAATAATAGGCTTAGTGGGACAATTCCTGACTTTCTCAATGGGTTTGATAGGGAGGGTTTTGAGGGGAATAGTGGGTTGTGTGGGGGTCCTCTTGGATCCAAGTGTGGTGGGATGAGTAAGAAGAATCTTGCTATTATTATTGCTGCTGGGGTGTTTGGTGCTGCTGCTTCATTGTTGCTGGCTTTTGGGTTGTGGTGGTGGTACCATTTGAGTGGGAAGAAGAAGAAGGGGTATGGGGTTGGTTCTGGTGTTGATGTTGGTGGTGCTGGTGCTGGTGATTGGGCTTTGAGGTTAAGAGGGTATAAGCTTGTGCAGGTTAGTCTCTTTCAGAAGCCTATTGTGAAGTTGAAGTTGGGGGATTTGATGGCTGCTACTAATAATTTCAGTGGGGAGAATGTTCTTTTCGCGACGAGGACTGGGACAACATATAAGGCTGATCTTCCGGATGGTTCCACGCTCGCTGTGAAGCGGTTGAGTGCTTGTAGGATTGGGGAGAAGCAGTTTGGGATGGAGATGAATCGGTTGGGGCAGGTTAGGCACCCAAATTTGGCGCCACTGTTGGGGTACTGTGTTGTGGAGGAGGAGAAGTTGTTGGTTTATAAGCACATGTCAAACGGGACGTTGTATTCGTTGTTGCATAAGAATAGTGGTGTGTTGGATTGGTTGATGAGGTTTAGGATTGGGTTGGGGGCGGCGAGGGGGCTTGCCTGGCTGCACCATGGGTGCCACCCTCCCATTATACAGCAGAACATTTGCTCCAATGTGATTCTTGTTGACGAGGAGTTTGATGCTCGATTGATGGACTTTGGGCTCGCGAGGCTCATGGCATCGGACTCGAATGGTAGTTTTGTGAATGGGGATTTGGGGGAGCTCGGGTACATTGCGCCTGAGTATCCGAGTACACTTGTTGCTTCATTGAAAGGGGATGTGTATGGGTTTGGAGTCTTGCTTTTGGAGTTGGTGACCGGGCGTAAACCTCTTGAGGTGAGCAATGGGGAGGAAGAGTTCAAGGGTAGCTTGGTGGATTGGGTGAATATGCATTCTAGTTCAGGCCGGATCAAGGATTGCATTGATAAAGCCATATGTGGAAGGGGACATGATGAGGAGATTCTGCAGTTTCTGAAAATCGCGTTGAATTGTGTGGTTTCTCGCCCCAAGGATAGGTGGTCTATGTACCAGGTTTATCATAACTTAAAGACCATATCCAAAGACCAGAGTTTCTTTGAACATGATGATGAATTCCCCTTGATCTTTGGTAAGCCAGAAAATGAGGTTGTGGCGTAG 1836 0.4798 MDRSNASSSSLLLLSLLGFQLFFFFASSQGEDYVTCLRGIKDSVSDPQNRLSNWRFDNTTVGFICDFVGVSCWNVRENRVLGLDLQDFKLSGKIPEALKYCGKSLQRLDLASNSFSSEIPHEICSWMPFLVSIDLSNNQLSGPIPPTIVNCSYLNELVLSNNQLSGSIPFEFGSLGRLKKFSVANNRLSGTIPDFLNGFDREGFEGNSGLCGGPLGSKCGGMSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHLSGKKKKGYGVGSGVDVGGAGAGDWALRLRGYKLVQVSLFQKPIVKLKLGDLMAATNNFSGENVLFATRTGTTYKADLPDGSTLAVKRLSACRIGEKQFGMEMNRLGQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLYSLLHKNSGVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARLMDFGLARLMASDSNGSFVNGDLGELGYIAPEYPSTLVASLKGDVYGFGVLLLELVTGRKPLEVSNGEEEFKGSLVDWVNMHSSSGRIKDCIDKAICGRGHDEEILQFLKIALNCVVSRPKDRWSMYQVYHNLKTISKDQSFFEHDDEFPLIFGKPENEVVA 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02538 611 Gene3D Phosphorylase Kinase; domain 1 273 386 - -
Pumo2g02538 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 30 220 - -
Pumo2g02538 611 Pfam Protein tyrosine and serine/threonine kinase 333 527 IPR001245 GO:0004672|GO:0006468
Pumo2g02538 611 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Pumo2g02538 611 ProSiteProfiles Protein kinase domain profile. 312 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02538 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 274 386 - -
Pumo2g02538 611 SUPERFAMILY L domain-like 31 200 - -
Pumo2g02538 611 SUPERFAMILY Protein kinase-like (PK-like) 289 582 IPR011009 -
Pumo2g02538 611 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 82 584 - -
Pumo2g02538 611 Gene3D Transferase(Phosphotransferase) domain 1 387 604 - -
Pumo2g02538 611 Gene3D Ribonuclease Inhibitor 34 221 IPR032675 -
Pumo2g02538 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 387 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02538 Pumo-Chr2 55155220 55157783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02538 17 610 Receptor kinase-like Gene Family AT3G28450 64.013 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Pumo2g02538 PK_Tyr_Ser-Thr 2.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02538 - - gmx:100810378 1064.29