Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02509 ATGGAAAGAATAATGGTTGGAAGTGCGACTAAGGTTGCATTCACCCTCTTGGTCACTTTCGCCATTACATTTCCATGCCTTGAGGCTGGCATTGCTGAGTTTGATGATTTTCTCAAAGCCCAAGCTGAAGAAGCCCACAAAATTGCTCTTGAGGCCTATGTCCCACAGCCCGAAGATGTCACCGATGAGCTCAATTTCCATGTTCACATGGCATTGGAAAACTCCACAAGGAGGGAACTAGGGCAGAGGAGAGGTAAAGGAGGAAAAAAATGTGATGCCACCAACCCCATTGACACTTGCTGGAGATGCAAAAAAAACTGGGCCAATGACCGGTTCAGGTTAGCCAAGTGCAGCAAAGGGTTCGGAAGACGGGCCACAGGTGGTCTCGGTGGGCCCATCTACGTCGTCACCGATAACTCCGATGACGACATGGTGAGCCCTAAGCCGGGAACCATCCGTCATGCCGTCACCCAACAAGGCCCCTTGTGGATCATCTTCCAACGCAGCATGATCATCAACTTGAAGCAAGAGTTGATGATTTCCTCCGACAAGACCATCGATGGTCGTGGCGCCAACGTGCAATTCAAGGACGGTGCTGGCCTCACTATTCAGTTCGTGAACAACGTTATCATCCACGGAATTCGCATCAAGAACATCGTACCCAAGGAAGGTGGCATGATTAGGGACTCCTACAACCACGTTGGACAGAGAACGAGGAGTGATGGCGATGCCATCTCCATTTTTGGAGCTTCCAACGTTTGGATCGACCATGTTTCCCTCTCTAACTGTGCCGATGGTCTTATCGATGTCATCCAGGGCTCCACTGCCATCACCGTCTCAAATTGCCACATGACCAAACATAACGATGTGATGCTCTTTGGGGCTAGTGACTCATACAACGGAGACAAGATCATGCAGATAACAGTGGCATTCAACCACTTCGGGCAGGGACTGATTCAGAGGATGCCAAGGTGCAGATGGGGATTCGTGCATGTCCTCAACAACGACTACACCCACTGGATGATGTACGCAATCGGTGGAAGCTCAGGGCCAACCATTCTGAGCCAAGGAAACCGTTTCATCGCTCCGAACAACGACGCCGCGAAGGAAATCACACACAGGGACTACGCAGGACCCGAAGTGTGGAAGAATTGGCAGTGGCAATCGGAAATGGACCTGTTCATGAATGGTGCAAAGTTCATTAGTTCAGGGTCACCCATTAAGATGACATACAAAAAGGGTCTCATAATGAAGCCAAGAGATGGAACCCATGTCAGCTAG 1281 0.5012 MERIMVGSATKVAFTLLVTFAITFPCLEAGIAEFDDFLKAQAEEAHKIALEAYVPQPEDVTDELNFHVHMALENSTRRELGQRRGKGGKKCDATNPIDTCWRCKKNWANDRFRLAKCSKGFGRRATGGLGGPIYVVTDNSDDDMVSPKPGTIRHAVTQQGPLWIIFQRSMIINLKQELMISSDKTIDGRGANVQFKDGAGLTIQFVNNVIIHGIRIKNIVPKEGGMIRDSYNHVGQRTRSDGDAISIFGASNVWIDHVSLSNCADGLIDVIQGSTAITVSNCHMTKHNDVMLFGASDSYNGDKIMQITVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYAGPEVWKNWQWQSEMDLFMNGAKFISSGSPIKMTYKKGLIMKPRDGTHVS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02509 426 Pfam Pectate lyase 175 360 IPR002022 -
Pumo2g02509 426 SUPERFAMILY Pectin lyase-like 95 407 IPR011050 -
Pumo2g02509 426 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Pumo2g02509 426 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Pumo2g02509 426 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Pumo2g02509 426 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Pumo2g02509 426 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Pumo2g02509 426 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Pumo2g02509 426 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Pumo2g02509 426 PANTHER PECTATE LYASE 18-RELATED 45 421 IPR045032 GO:0030570
Pumo2g02509 426 SMART amb_all 169 366 IPR002022 -
Pumo2g02509 426 Pfam Pectate lyase, N terminus 31 80 IPR007524 GO:0030570
Pumo2g02509 426 Gene3D - 94 425 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02509 Pumo-Chr2 54686035 54688376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02509 14 425 Polysaccharide Lyase AT1G14420 58.275 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02509 K01728 - gmx:100785801 803.127