Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02502 ATGGAGGCCATGTTAAAATTGTCTAGTCTTTGTGGTCAAGAGATAGATGATAAGAGAGGTACTTCCATTTGCTCAGAAGAGGACTTCTGTGCTGAAAAGGGTAGTAAGGAAGATAAACTTGAATCTGCTAAAGCTGAGATGGGTAAGGTGAAAGAAGAGAATGAACGATTGAAGATGATGATAGAAAAAGTAGAAAAGGATTACCACTCTCTTCAACTTCGTTTCTTTGACATCCTTCAGAGAGAAACTTCAAAGAAAGGTGTGGAAGATTCAGCTGGTTCCCCTGATGAAGTGGAGGAACCTAAGCTTGTGTCACTTTGTCTTGGAACAAGTCCAAGGGAGCCTAGAAAGGATGGAATAATTGGTAACTCTATCAAGCCTAAAGAAAATGAAGATTTGGAAGCCAGCCTCACCCTTGGTTTAGACACCAAAAGTGTGTCTTCAAAGGAACAGGTATCTGATATGAGTCCCATGAACACCTCAGAAGAGCTAAAGGAAGAAGATTCAACAAATAAATCAGTAAGGACCAAAGATGGAGGTGATGAAATTTCAGACCAAACACCCCCCACCAAGAGGGCTAGAGTTTGTGTGAGAACTAGATGTGATACTCCCACGATGCATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACACTTGCTCCAGCATGCCCGGTTAGGAAACAGGTGCAAAGATGTGCTGAGGACATGTCCATCTTAATCACCACATATGAAGGAACTCACAACCACCCAATTCCAGCTTCAGCCACAGCCATGGCTTCCACCACTTCTGCTGCTGTTTCCATGTTGTTGTCAGGCTCTTCAACATCTCAGCCTACAGATCACAATTTTGCCTCTTATGCAAATTCTCCTACACTGTTCAGTGGTATGAATTTCAATCTTTTAAACCAGCCAAGAGCAAACCAAGTCTTGCTACCAACCCCTTCCTCACATTTGTTCCCAACAATCACTCTAGACCTGACTTCTACTCCATCCTCTTCATTAACTCAAGGCCATTGTTTACCTTCAAACTTTGCTTCAACCCCAAGATTCCCTACATTAAGTCTAAACTTTTGCTCCCCAGAATCCAACATTCCACTATCCTTTTGGGGCAAGGGACTTCCTAACAATGGCACTGTTCCTATTGACAGAACTCACATCAAGCCATTCGATGTAGGAAACCAATTTCAAGAACATTTCTACCAACAGTGCTTCAAGAACCAAACTCCATTCAGGGAGGCTTTGGCAGAAACACTAACCAAAGCAATCAGCACAGACACGAGCCTTCGGTCCGCCATAGCTGCTGCAGTTTCATCTATAAGTAGACAAGGATCAAGCAGTGGGAACAAGGGTGATGGAGAGATTTTAGGTTCAGGCTTGAGCCTGAAACTTGGGGAGCATCCTCAAATTGCTTCTTCAAATTCCTTGAACCAGAATGGGAAAGCATGCTTAACAGGCTACTTCAACAGATCATCATCTTCAAGTTCTCAGGGTGGAAACTCCATGCTTTTCCAACCTCAATGGCCATTTTCTCTTCCTAAGACTAGCACACCTCCTTCCAATGTTGATTACATCAACCATTGGATTTCAGAAATCAATTCTCATCTTTAG 1653 0.4295 MEAMLKLSSLCGQEIDDKRGTSICSEEDFCAEKGSKEDKLESAKAEMGKVKEENERLKMMIEKVEKDYHSLQLRFFDILQRETSKKGVEDSAGSPDEVEEPKLVSLCLGTSPREPRKDGIIGNSIKPKENEDLEASLTLGLDTKSVSSKEQVSDMSPMNTSEELKEEDSTNKSVRTKDGGDEISDQTPPTKRARVCVRTRCDTPTMHDGCQWRKYGQKIAKGNPCPRAYYRCTLAPACPVRKQVQRCAEDMSILITTYEGTHNHPIPASATAMASTTSAAVSMLLSGSSTSQPTDHNFASYANSPTLFSGMNFNLLNQPRANQVLLPTPSSHLFPTITLDLTSTPSSSLTQGHCLPSNFASTPRFPTLSLNFCSPESNIPLSFWGKGLPNNGTVPIDRTHIKPFDVGNQFQEHFYQQCFKNQTPFREALAETLTKAISTDTSLRSAIAAAVSSISRQGSSSGNKGDGEILGSGLSLKLGEHPQIASSNSLNQNGKACLTGYFNRSSSSSSQGGNSMLFQPQWPFSLPKTSTPPSNVDYINHWISEINSHL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02502 550 SUPERFAMILY WRKY DNA-binding domain 198 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo2g02502 550 MobiDBLite consensus disorder prediction 160 188 - -
Pumo2g02502 550 SMART WRKY_cls 206 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g02502 550 MobiDBLite consensus disorder prediction 108 128 - -
Pumo2g02502 550 Pfam WRKY DNA -binding domain 208 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g02502 550 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 27 460 IPR044810 GO:0003700
Pumo2g02502 550 Coils Coil 33 74 - -
Pumo2g02502 550 MobiDBLite consensus disorder prediction 140 191 - -
Pumo2g02502 550 MobiDBLite consensus disorder prediction 140 159 - -
Pumo2g02502 550 FunFam probable WRKY transcription factor 31 191 268 - -
Pumo2g02502 550 Gene3D WRKY domain 191 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo2g02502 550 ProSiteProfiles WRKY domain profile. 201 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g02502 550 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02502 Pumo-Chr2 54584926 54588531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02502 47 502 WRKY Transcription Factor Family AT5G15130 41.082 1.33e-82 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo2g02502 WRKY 9.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02502 - - gmx:100819296 920.613