Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02497 ATGCAGCTGGCCAAGGCTTTGGGGCTTCAGCCGAGGCAGATCGCCATTTGGTTCCAGAACAGAAGGGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAGGTGCTCAAGAAGCAGTTTGAAGCTGTTAAGGCTGATAATGACTCCCTCAAGGCCCAGAACCAGAAACTACATGCAGAGTTACAAACTCTAAAAAGTAAAGACTGCTGTGAAACCGGAACAGCTAGTCTCAAGAAAGAAACTGAGGGTTCTTGGAGCAATGGCAGCAACAACAGTTCAGACATCAATTTGGATCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGCAAAAGCCTTTTACCCACTTCCCTTAAGCCTACAAGCATTACTCAACTCCTCCAATGCTCATCAAGGTCAGATCTCCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGCCTGATCAGCAGCACCAGTTTCATTAA 510 0.4667 MQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQTLKSKDCCETGTASLKKETEGSWSNGSNNSSDINLDLSRTPVMNSPVSSQNGKSLLPTSLKPTSITQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWPDQQHQFH 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02497 169 Coils Coil 20 68 - -
Pumo2g02497 169 ProSiteProfiles 'Homeobox' domain profile. 1 28 IPR001356 GO:0003677
Pumo2g02497 169 MobiDBLite consensus disorder prediction 77 97 - -
Pumo2g02497 169 CDD homeodomain 2 29 IPR001356 GO:0003677
Pumo2g02497 169 ProSitePatterns 'Homeobox' domain signature. 3 26 IPR017970 GO:0000981|GO:0006355
Pumo2g02497 169 Pfam Homeodomain 2 26 IPR001356 GO:0003677
Pumo2g02497 169 Gene3D - 1 35 - -
Pumo2g02497 169 SUPERFAMILY Homeodomain-like 2 37 IPR009057 -
Pumo2g02497 169 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 161 IPR045224 GO:0003700
Pumo2g02497 169 MobiDBLite consensus disorder prediction 78 97 - -
Pumo2g02497 169 Pfam Homeobox associated leucine zipper 28 68 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02497 Pumo-Chr2 54542565 54544273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02497 1 163 Homeobox Transcription Factor Family AT3G01220 50.299 8.58e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo2g02497 HALZ 5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02497 K09338 - gmx:100790803 300.441