Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02494 ATGTCTAGCAGAAGGTCCAGGCAGCAATCTACATCCACAAGGATCTCCGATGACCAAATCATCGACCTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGCAACAGGCGCTCAGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACCTGTAACTACATCAGAAGCTTACACAGAGAAGTGGATGACTTAAGCGAACGACTGTCTCAGTTGTTGGCCACAATTGATGCTGATAGCCCTGAAGCTGCTATCATTAGGAGCCTAATTAACTAA 276 0.4565 MSSRRSRQQSTSTRISDDQIIDLVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLATIDADSPEAAIIRSLIN 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02494 91 Gene3D - 2 83 IPR036638 GO:0046983
Pumo2g02494 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Pumo2g02494 91 Coils Coil 55 75 - -
Pumo2g02494 91 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Pumo2g02494 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Pumo2g02494 91 CDD bHLH_AtPRE_like 9 75 - -
Pumo2g02494 91 FunFam Transcription factor ILI6 5 87 - -
Pumo2g02494 91 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02494 Pumo-Chr2 54475176 54478372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02494 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.250 4.82e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo2g02494 HLH 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02494 - - gmx:100794486 159.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g02494 2 54475176 54478372 Pumo5g00837 5 16341724 16343886 PCT