Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02486 ATGGAGAGAGAGAACATGGAGGAGAGGAATGAGATGGAAAGGATTGATGATGTGATGCCAGGGTTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGATTTTTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTTCCTATTGAACTCATTAAGCAAGTGGATATTTACAAATTTGATCCATGGGACCTTCCAAAGCTGGCAGGTACTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGACAGAAAATACAGGAACAGTGCACGTCCAAATAGAGTCACTAGAGCTGGGTTTTGGAAGGCCACTGGAACTGATAGGCCTATATATTCCTCTGAAGGAAAGTGCATTGGTCTGAAGAAGTCTCTTGTGTTCTACAGAGGAAGAGCTGCCAAAGGAATGAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTGCATTTCAGACTCATCCCCTCCCAAAAAACTCTCAGACAAAAGCCTCCCTCCAAGTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTCTCCATGGCACAGAAAGCCTTATCTCACCCTTGGATCTCTCAGTTACCTGGAAGCATGGTATCTGACATGTTCACACAGGGTGCAAACTGCTATAACCTAGGATCACCAGCCATTCAATTTTGTGGTGACAAGCAGGAGTTACACCAAGTCTCCAATGATACCATCAACACCAACTTCTCAGCTTCAGATATTCCCACTTACAAACCCATCAACAGCAGCACAGTTTCCAAAATTCCAGTTTCAGATGGAAACCTTGCTGACAACTTCATATTCTACTCAGAACCCACCAAGAGCACACTTGATGCCAGTTCCATGCTTTCTCCCAACCCTGACTATATAGTATTTGAAGAGCCAAACCAACAGTATAGTGGCTTCTCAATCAATGTACCTCATGACATGCAACAAAACATGAGCACAGAAACAGGAACAAAAGAACAAGATTGGGAAACAATTGGGAGAACCACTGGATTTCCCTTCAGTTTGAGTCCTCCAGATGATGCTTGGAAGGCTTCTTCTGTGGCATGGGACTCACCTCCTTGCCCCAGTGATATGTCCACTACCTATTCCACCAACAAATGCTACACTTGA 1125 0.4391 MERENMEERNEMERIDDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKFDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSSPPKKLSDKSLPPSDSWAICRIFKKTNSLSMAQKALSHPWISQLPGSMVSDMFTQGANCYNLGSPAIQFCGDKQELHQVSNDTINTNFSASDIPTYKPINSSTVSKIPVSDGNLADNFIFYSEPTKSTLDASSMLSPNPDYIVFEEPNQQYSGFSINVPHDMQQNMSTETGTKEQDWETIGRTTGFPFSLSPPDDAWKASSVAWDSPPCPSDMSTTYSTNKCYT 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02486 374 ProSiteProfiles NAC domain profile. 18 175 IPR003441 GO:0003677|GO:0006355
Pumo2g02486 374 FunFam NAC domain-containing protein 35 27 178 - -
Pumo2g02486 374 Gene3D NAC domain 27 180 IPR036093 GO:0003677|GO:0006355
Pumo2g02486 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 272 - -
Pumo2g02486 374 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Pumo2g02486 374 SUPERFAMILY NAC domain 15 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02486 Pumo-Chr2 54351077 54354812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02486 7 191 NAC Transcription Factor Family AT5G39820 69.000 8.32e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo2g02486 NAM 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02486 - - gmx:100777630 654.44