Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02484 ATGGGAAGGCCACCATGTTGTGATAAAGAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATTCAGGAACATGGTCCTGGCAATTGGAAGGCTGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCCATAGCTGCTTACCTACCACAAAGAACAGATAACGACATAAAAAACTATTGGAACACCTATTTGAAAAAGAAGCTGAACAAATTGGAAACAGGTTCTGATCAAGGAAGCTGCTTGGGACATACTGGGGTTTCAGTTTCTCATCAGCCAATCTCTAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGATATCCACATGGCCAAGAAAGCTCTCAGTGAAGCACTCTCACCAAACAAGGCATCATCTACTACTACCTTGTTAGCTGAATCAAATTCAAACCTCTCCAATGATAATAATGGCACCTTCTATAATAATAATTCCACTAAACCAACAACACAATCTATATGCTATGCCTCAAGTGCTGACAACATAGCTCGTTTGCTGAAGGGGTGGATGAAGAACACACCAAAGGCCTCACGTGCTGCCTCAGCTGTGACTCAAAATTCCTTCAACAACTTGGCTGCTGGTGGTGACACTGCTTCTAGTGAAGGAACAACAACAAAGGGAAGCACAAGCAGTACTGTTGAATTGTCTGAGACTTTTGAGTCCTTGTTTGGCTATGAGTCTTTGGATTATTCCTCAAATTCTGAGTTCTCACAATCTCTTTCTCCTGAGGCTACTCTTTTCCAAGATGAGAGCAAGCCACATACTACTGGAAATTCCATAGACATGCCTTTCTCTTTGCTTGAGAAATGGCTTCTAGATGATGCTGCTTGTCAAGACAAACTTGGCTTCTAG 1008 0.4286 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLETGSDQGSCLGHTGVSVSHQPISRGQWERRLQTDIHMAKKALSEALSPNKASSTTTLLAESNSNLSNDNNGTFYNNNSTKPTTQSICYASSADNIARLLKGWMKNTPKASRAASAVTQNSFNNLAAGGDTASSEGTTTKGSTSSTVELSETFESLFGYESLDYSSNSEFSQSLSPEATLFQDESKPHTTGNSIDMPFSLLEKWLLDDAACQDKLGF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02484 335 CDD SANT 69 112 IPR001005 -
Pumo2g02484 335 Gene3D - 68 127 - -
Pumo2g02484 335 CDD SANT 16 61 IPR001005 -
Pumo2g02484 335 FunFam MYB-related transcription factor 13 66 - -
Pumo2g02484 335 MobiDBLite consensus disorder prediction 243 263 - -
Pumo2g02484 335 MobiDBLite consensus disorder prediction 165 196 - -
Pumo2g02484 335 MobiDBLite consensus disorder prediction 163 196 - -
Pumo2g02484 335 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo2g02484 335 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo2g02484 335 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo2g02484 335 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo2g02484 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo2g02484 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 255 - -
Pumo2g02484 335 SMART sant 66 114 IPR001005 -
Pumo2g02484 335 SMART sant 13 63 IPR001005 -
Pumo2g02484 335 Gene3D - 13 66 - -
Pumo2g02484 335 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo2g02484 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02484 Pumo-Chr2 54287106 54288673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02484 1 328 MYB Transcription Factor Family AT5G62470 50.696 1.34e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g02484 Myb_DNA-binding 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02484 K09422 - gmx:780542 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g02484 2 54287106 54288673 Pumo5g00834 5 16271530 16273410 PCT