Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02483 ATGAGGAAGCGCCAAGTAGTTGTGAGAAGAGAGGAGCCTCAGAGAAGCGTTAGGACGGTGAAATATGGCGAGTGCCAGAAGAATCATGCCGCGAATGTTGGAGGGTATGCTGTTGATGGCTGCAGAGAGTTCATGGCGAGTGGCGGAGAAGGAACAAGTGCTGCTCTCACTTGTGCCGCGTGTGGCTGCCACAGGAACTTCCACAAGAGACAGGAAACTGAAGTGGTGAGTGAGTGCTCCTCGCCTACCTCCAATGGAACTTGA 264 0.5341 MRKRQVVVRREEPQRSVRTVKYGECQKNHAANVGGYAVDGCREFMASGGEGTSAALTCAACGCHRNFHKRQETEVVSECSSPTSNGT 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02483 87 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 74 - -
Pumo2g02483 87 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Pumo2g02483 87 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Pumo2g02483 87 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02483 Pumo-Chr2 54254770 54255774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02483 1 86 Zinc finger-homeobox gene family AT3G28917 68.687 1.61e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo2g02483 ZF-HD_dimer 6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02483 - - gmx:100305714 174.096