Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02482 ATGGAGATAATAACACCAACGCCAACAACAGCAACAACCGCCACAAACGCAGCTGCGAAATCGCCGGAACCCGATATAGAGACTCCGACCCGGATCCACCAAACCGCCGGAAACCCGAACCCGAATCCAAAGCCGGTGTCTTTCTGCAACGGCGTCTTGAAGCGCCACCATGTAAACCACCGCGTCGCGGTGGTTTACAAGGAATGCCTGAAGAACCACGTGGCCAGCTTAGGTGGCCACGCTTTAGATGGTTGCGGCGAGTTCATGCCGTCGCCGGCGGCCACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCCGCGAACCCGAGGAGCCACCCATTTCTCCGGCGACCCATCACGTCCTCGAGTACCAGCCCCACCACCGCCACCACCCTCCGCCGCCGGCGCCGTCGCACCGGAGTCCCAACTCCGCCTCCCCGCCGCCGATCTCCTCCTACCCCTCCGCCCCCCACATGCTCCTCGCCCTCTCCGGCGGCGGCGGCCTCTCCGTCGCGCCGGAAAACACCGCCGCGCCGGCGCCGCCGCACCACCACTCGCGGAAACGCTTCCGAACCAAGTTCACCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGAGAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAGAAATGGTTATGGAGTTCTGCAACGAGGTTGGTGTCGACAGAGGAGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTTTCGCGAAAAAAGACAACAGCAACAACGTTAATGGTAGCGCTGTCGGTGTCAGCGCCAACGGTGTTGGCAATCACGTTGGCGCTATTGGCAGCGCTACCGTTAGAAGCAGCGTTCATGTCCACGAACATGAACGCGGCGGAATTAACGGTAACGGTAGCGCCGACAACAACAACCACAACCTCGGTTCCCAGGATGTGAACGAGTACGAGAATGATAGTGGGACTAACGGCGGTGGTACTAATGGGTCTTCTTCTTCTTCTTGA 1026 0.5975 MEIITPTPTTATTATNAAAKSPEPDIETPTRIHQTAGNPNPNPKPVSFCNGVLKRHHVNHRVAVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPPPPAPSHRSPNSASPPPISSYPSAPHMLLALSGGGGLSVAPENTAAPAPPHHHSRKRFRTKFTQEQKEKMHEFAEKVGWKMQKRDEEMVMEFCNEVGVDRGVLKVWMHNNKNTFAKKDNSNNVNGSAVGVSANGVGNHVGAIGSATVRSSVHVHEHERGGINGNGSADNNNHNLGSQDVNEYENDSGTNGGGTNGSSSSS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02482 341 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
Pumo2g02482 341 MobiDBLite consensus disorder prediction 145 163 - -
Pumo2g02482 341 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Pumo2g02482 341 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Pumo2g02482 341 MobiDBLite consensus disorder prediction 1 19 - -
Pumo2g02482 341 MobiDBLite consensus disorder prediction 291 341 - -
Pumo2g02482 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 254 - -
Pumo2g02482 341 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 66 117 IPR006456 -
Pumo2g02482 341 SUPERFAMILY Homeodomain-like 187 257 IPR009057 -
Pumo2g02482 341 Gene3D - 182 257 - -
Pumo2g02482 341 MobiDBLite consensus disorder prediction 1 43 - -
Pumo2g02482 341 MobiDBLite consensus disorder prediction 134 198 - -
Pumo2g02482 341 FunFam Zinc-finger homeodomain protein 2 183 257 - -
Pumo2g02482 341 MobiDBLite consensus disorder prediction 304 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02482 Pumo-Chr2 54220807 54222108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02482 1 252 ZF-HD Transcription Factor Family AT5G15210 51.737 7.08e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo2g02482 ZF-HD_dimer 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02482 - - gmx:100814730 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g02482 2 54220807 54222108 Pumo5g00832 5 16208575 16210281 PCT