Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02473 ATGGTCCCAACAGCTCAAGTGTGTCAGGGTTTGATGTTGACTGACCTCTATTTATTCCATCTCCAATCCCCCCTCATTTCCCCAAACAAACTCCATTCAATGTTCACCTTCATGAAAATGGCTCATCTTGGCTTCTTCCTTCTGGGGTGTCTCTCCATGATCTCATATGCTAATGGTTATGTCAGCAATGGTGGTTGGACCAATGCACATGCCACATTCTATGGTGGAAGTGATGCTTCTGGCACAATGGGTGGGGCTTGTGGTTATGGAAACTTGTATAGTCAAGGATATGGAACTAACACAGCAGCACTTAGCACTGCCTTGTTCAACAATGGCTTGAGCTGTGGCTCATGCTACCAAATTAAATGTGCAAATGACCCCCAATGGTGCCTCCCTGGCACCATTGTAGTCACTGCTACTAATTTCTGCCCTCCTGGTGGATGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTGTTTCAGCAAATTGCCCAATATAGAGCTGGTATTGTTCCTGTAGTTTACAGAAGGGTACGGTGCATGAGAAGAGGTGGAATCAGGTTCACCATCAATGGTCATTCATACTTCAATTTAGTCCTTGTGACTAATGTTGGGGGTGCTGGTGATGTGCATTCTGTGGCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAATTGGGGCCAGAACTGGCAGAGCAATTCCTACCTGAATGGACAGAGTCTTTCCTTTTTGGTCACCACTAGTGATGGCCGCAGTGTGCTCTCTTTCAATGCTGCGCCACCAAGTTGGTCCTTTGGACAGACCTACACCGGAAGGCAATTCCGCTACTAG 849 0.47 MVPTAQVCQGLMLTDLYLFHLQSPLISPNKLHSMFTFMKMAHLGFFLLGCLSMISYANGYVSNGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYQIKCANDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYRAGIVPVVYRRVRCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSFNAAPPSWSFGQTYTGRQFRY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02473 282 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 84 188 IPR007112 -
Pumo2g02473 282 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Pumo2g02473 282 PRINTS Expansin/Lol pI family signature 105 123 IPR007118 GO:0005576
Pumo2g02473 282 PRINTS Expansin/Lol pI family signature 263 277 IPR007118 GO:0005576
Pumo2g02473 282 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Pumo2g02473 282 PRINTS Expansin/Lol pI family signature 65 80 IPR007118 GO:0005576
Pumo2g02473 282 PRINTS Expansin/Lol pI family signature 171 187 IPR007118 GO:0005576
Pumo2g02473 282 Pfam Expansin C-terminal domain 189 266 IPR007117 -
Pumo2g02473 282 SUPERFAMILY PHL pollen allergen 185 277 IPR036749 -
Pumo2g02473 282 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Pumo2g02473 282 PRINTS Expansin signature 123 134 IPR002963 GO:0009664
Pumo2g02473 282 PRINTS Expansin signature 146 163 IPR002963 GO:0009664
Pumo2g02473 282 PRINTS Expansin signature 263 279 IPR002963 GO:0009664
Pumo2g02473 282 PRINTS Expansin signature 135 145 IPR002963 GO:0009664
Pumo2g02473 282 PRINTS Expansin signature 96 110 IPR002963 GO:0009664
Pumo2g02473 282 PRINTS Expansin signature 234 255 IPR002963 GO:0009664
Pumo2g02473 282 PRINTS Expansin signature 163 176 IPR002963 GO:0009664
Pumo2g02473 282 PRINTS Expansin signature 187 199 IPR002963 GO:0009664
Pumo2g02473 282 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 198 277 IPR007117 -
Pumo2g02473 282 CDD DPBB_EXPA_N 65 183 - -
Pumo2g02473 282 Pfam Lytic transglycolase 101 178 IPR009009 -
Pumo2g02473 282 FunFam Expansin 188 280 - -
Pumo2g02473 282 FunFam Expansin 55 184 - -
Pumo2g02473 282 Gene3D - 188 280 IPR036749 -
Pumo2g02473 282 PANTHER EXPANSIN-A15 50 280 IPR002963 GO:0009664
Pumo2g02473 282 SMART dpbb_1 101 178 IPR007112 -
Pumo2g02473 282 SUPERFAMILY Barwin-like endoglucanases 65 206 IPR036908 -
Pumo2g02473 282 Gene3D - 54 183 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02473 Pumo-Chr2 54084493 54087015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02473 39 281 Expansin Gene Family AT2G03090 77.689 6.71e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02473 K20628 - gmx:100799370 503.827