Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02471 ATGGAAGCAATGGAGAACAATCATCATCATCATCAGAGAGATACAATGGAAGAGCAAAGGTTTGAATTGCCACCAGGATTCAGGTTTCATCCAACAGATGAAGAACTCATCACTCACTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGTGCAAGAGCCATTGGGGAGGCTGATTTGAACAAGTGTGAGCCATGGGATTTGCCTCGGATGGCCAAAATGGGTGAAAAGGAGATGTATTTTTTCTGTTTTAGGGACAGAAAATACCCAACTGGTCAAAGGACTAATAGGGCCACTGGTGCTGGATACTGGAAGGCCACAGGCAAAGACAAAGAGATATACAAGGCAAAGGCACTGATTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCAAGTGGTGAAAAAACTAACTGGGTCATGCATGAATACAGATTAGAAAATGAACATTCTGTGCACAATCCACCCAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTTCAGAAGAGTAATTGTGGGAAGAAAATGCACATTTCTGGGTTGGTGAGGTTCAGTAGTACCTTTAGAAAGGACATGCCTTCATTGATGGAGTCTTCTCCATACAACAACAACAGTGAATCAAAACCTGTTTTGGGGGAGTCATCACAGGCAACCTGCTTCTCTGATCCAAACCAAAGTGAGGATCAAAGGACACAAGATGAAAACATAGTTGATAGCTATGAAACTCTCATGTTGGCATCTTCATATTCTTCAAACCCCTCTGATATTTCCCCTGCCTCCTGGACTTTTACCAAATCTGCCCCTACTGTGTCCCACCAATCACTCCAAGTTGGGAATTCACACTGCTCAGATTATTTGATGCTTCAGGAACAGTCCATGTTGGGGATGTTGATTGAAAACCATGGATCAAGTACCAGCCAAAGAACTCAGAAAGCTCAGGATAAAGACTTTGATGCTGACATGTCCTCTGTGATGTACAACAATGAAATGTTTCAAAGATCATTTGGGACTCAGGAATATTCATCACCTTCTGTAGGACATGTGTATACTAGTGGCCTATGGGGATTTTAA 1083 0.4247 MEAMENNHHHHQRDTMEEQRFELPPGFRFHPTDEELITHYLSQKVLDSCFCARAIGEADLNKCEPWDLPRMAKMGEKEMYFFCFRDRKYPTGQRTNRATGAGYWKATGKDKEIYKAKALIGMKKTLVFYKGRAPSGEKTNWVMHEYRLENEHSVHNPPKKAMNDWAICRIFQKSNCGKKMHISGLVRFSSTFRKDMPSLMESSPYNNNSESKPVLGESSQATCFSDPNQSEDQRTQDENIVDSYETLMLASSYSSNPSDISPASWTFTKSAPTVSHQSLQVGNSHCSDYLMLQEQSMLGMLIENHGSSTSQRTQKAQDKDFDADMSSVMYNNEMFQRSFGTQEYSSPSVGHVYTSGLWGF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02471 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 270 - -
Pumo2g02471 360 Gene3D NAC domain 32 177 IPR036093 GO:0003677|GO:0006355
Pumo2g02471 360 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Pumo2g02471 360 Pfam No apical meristem (NAM) protein 24 148 IPR003441 GO:0003677|GO:0006355
Pumo2g02471 360 SUPERFAMILY NAC domain 16 173 IPR036093 GO:0003677|GO:0006355
Pumo2g02471 360 FunFam NAC domain-containing protein 100-like 32 177 - -
Pumo2g02471 360 MobiDBLite consensus disorder prediction 199 236 - -
Pumo2g02471 360 MobiDBLite consensus disorder prediction 199 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02471 Pumo-Chr2 53659823 53661812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02471 22 360 NAC Transcription Factor Family AT5G07680 51.026 1.69e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo2g02471 NAM 7.8e-39 No_clan