Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02470 ATGGGACGATCACCATGCTGCGACAAGGTTGGTTTAAAGAAAGGACCATGGACTCCAGAGGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAGAGTTGCAGACTAAGATGGACCAATTATCTTAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAGCAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAGAACTATTGGAACACGCATCTTAAGAAAAGGTTAACCAAAATGGGAATTGACCCTGTGACACACAAGCCTAAAAATGATGCACTTCTCTCTAGTGATGGTCAATCCAAAACCGCTGCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCAAGACTAGTCAGAGAATCAAAACTACGTTCACATTCACTTCAGCAACAACTTGGAAGTAGTTCTTCTACGTTTGCATCTTCATCTTCTGCTTCAACTTCAGCTTCAGCTCTCAATAATAGTAATAATAATAAGCCAGAAGCACCGCCGCCACCGCCACCGCCACCGCCACCACCGCTGCCACCGTCGCGTTCTTCCCTTGATGTTCTCAAGGCTTGGAATAATGGGGGGTGGTTAAAATCCAATGAAGGAAATGGTGGCATTGCAAGCAATGTTGGGGTAAGTGGGGACCTTGAGTCTCCTACTTCTACACTATCTTTCTCTGAGAATGCACCACCAATTATGAATGGAATTGGAGGAGAAAATAACAACAACAACAACAATGATAGTGCAATGCCTATGATTGAGTTTGTGGGGAGTTCAGGCAATTCTTCTTCTCTTGTGAAAGAAGAAGGTGAGCAAGAGTGGAAAGGTTATGATAGTTCCATCACTACTTTTAGTTCTGGTCTGCATGAGTTCACTATGAACATGGAAGGCACGTGGGCCTCTGAGTCCCTCAGGACTAGTGACTCACATGATGACATTGTTGAAGAAGGGTTCACCAATCTTCTGCTTAAAACAAACTCTGACGACCCGAGTTTGTCATCGGAGGGTGGGGGGAGAGTCTAA 1149 0.4578 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQLGSSSSTFASSSSASTSASALNNSNNNKPEAPPPPPPPPPPPLPPSRSSLDVLKAWNNGGWLKSNEGNGGIASNVGVSGDLESPTSTLSFSENAPPIMNGIGGENNNNNNNDSAMPMIEFVGSSGNSSSLVKEEGEQEWKGYDSSITTFSSGLHEFTMNMEGTWASESLRTSDSHDDIVEEGFTNLLLKTNSDDPSLSSEGGGRV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02470 382 MobiDBLite consensus disorder prediction 238 264 - -
Pumo2g02470 382 CDD SANT 69 112 IPR001005 -
Pumo2g02470 382 MobiDBLite consensus disorder prediction 132 147 - -
Pumo2g02470 382 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo2g02470 382 CDD SANT 16 61 IPR001005 -
Pumo2g02470 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 259 - -
Pumo2g02470 382 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo2g02470 382 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo2g02470 382 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo2g02470 382 SMART sant 66 114 IPR001005 -
Pumo2g02470 382 SMART sant 13 63 IPR001005 -
Pumo2g02470 382 MobiDBLite consensus disorder prediction 205 224 - -
Pumo2g02470 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo2g02470 382 MobiDBLite consensus disorder prediction 173 204 - -
Pumo2g02470 382 MobiDBLite consensus disorder prediction 173 264 - -
Pumo2g02470 382 SUPERFAMILY Formin homology 2 domain (FH2 domain) 209 222 - -
Pumo2g02470 382 MobiDBLite consensus disorder prediction 119 147 - -
Pumo2g02470 382 FunFam MYB transcription factor 69 116 - -
Pumo2g02470 382 FunFam MYB-related transcription factor 13 66 - -
Pumo2g02470 382 Gene3D - 69 116 - -
Pumo2g02470 382 Gene3D - 13 66 - -
Pumo2g02470 382 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo2g02470 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02470 Pumo-Chr2 53633194 53635435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02470 1 298 MYB Transcription Factor Family AT3G01140 63.000 3.66e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g02470 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02470 K09422 - gmx:100787446 617.846