Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02467 ATGGAAGGATCCGTTTGTGTGAGAAAAGGAGCATGGAGTGAAGTGGAAGATGACCTTCTTAGGGCGTGTGTTCAACAATATGGTGAAGGAAAATGGCACTTAGTGCCTACAAGAGGAGGGTTGAACAGGTGCCGCAAAAGCTGCAGATTGCGGTGGTTGAATTATCTGAAACCAACTATCAAGCGGGGAGAGTTCACTGAGGACGAAGTTGATATGATGCAAAGATTGCATAAACTGTTGGGAAACAGATGGTCCTTGATAGCTGGAAGACTTCCAGGAAGAACTCCAAATGATGTGAAAAACTATTGGAACACCTACATTCGAAGGAAGTTATTATCATCTCAAAAGGTGGTCATCAATGAAAAGGAAGAGGAAGAAGCAGTGAAACCTCACGTGGTGATAAAGCCTCAAGCTCGAACTATCTCATCAAGACCTTCACCCTGGTTGAGAGGGAGTGTTCTTAGAGAAGGTGATGAGAGTGGGGCCAAACAATGCTCAACTCAAGCATGTGCAGCTTCATTATCTGAGTGCAATAATTGGTGGGAAACTATGATATTGCACGACAAGGTGGGCAACATAGAGAACAACCAATGCTTAGATGTGGTTGGGAACCTCGTGAAAGACATTAATTGTGATGAGGATCTTGCTTCCTTGACAACACATGGAGGAGCAGATTTTCTTATAGAAGGGCAAAATTGGAGTGATTTTTTTCTTGATACAAATTTGTGGGATTCTTGA 738 0.4295 MEGSVCVRKGAWSEVEDDLLRACVQQYGEGKWHLVPTRGGLNRCRKSCRLRWLNYLKPTIKRGEFTEDEVDMMQRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTYIRRKLLSSQKVVINEKEEEEAVKPHVVIKPQARTISSRPSPWLRGSVLREGDESGAKQCSTQACAASLSECNNWWETMILHDKVGNIENNQCLDVVGNLVKDINCDEDLASLTTHGGADFLIEGQNWSDFFLDTNLWDS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02467 245 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Pumo2g02467 245 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 129 - -
Pumo2g02467 245 Gene3D - 9 61 - -
Pumo2g02467 245 CDD SANT 64 107 IPR001005 -
Pumo2g02467 245 SMART sant 8 58 IPR001005 -
Pumo2g02467 245 SMART sant 61 109 IPR001005 -
Pumo2g02467 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 56 IPR017930 -
Pumo2g02467 245 CDD SANT 11 56 IPR001005 -
Pumo2g02467 245 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Pumo2g02467 245 FunFam Transcription factor MYB113 64 133 - -
Pumo2g02467 245 Gene3D - 63 132 - -
Pumo2g02467 245 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Pumo2g02467 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Pumo2g02467 245 FunFam Myb transcription factor 9 61 - -
Pumo2g02467 245 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Pumo2g02467 245 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02467 Pumo-Chr2 53562796 53565099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02467 7 146 MYB Transcription Factor Family AT1G66370 59.310 2.59e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g02467 Myb_DNA-binding 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02467 - K16166 gmx:100306270 378.252