Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02454 ATGGCAAGGAAGAGAAAGGTTGCTGAAGTAGTGGAAGAGAGAAACCTGTGTGAGGGAACCATGGGTTGGGATGAGATGATGAAACAAGCTGCAGCACTTGGGGGAGTGCAAAGAGCCAGGAAGAGGTTTGTTGGGGTAAGGCAAAGGCCATCAGGTAGATGGGTGGCTGAGATCAAAGATACCATTCAGAAGATAAGGGTGTGGTTGGGAACTTTTGACACTGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCTTGCTTCGCGGCGCCAACACAAGGACAAACTTCTGGCCTTGTTCTCAATCCTCCACAAGTCCAGCTCTTTCCTCAAAGATCACCAATCTCCTCCTTCAAAGGCTTAAAGAAAGGAACAACAACAACACTTGCTCCTCTTCCTCTTCCTCCACCTCCTCCACCTCACTTCTCATCAACCACCAACAAATGCAGCAACAAGTTGATGCATATGGAGCAGGATCAACACAATTCTCAATTGACCAATTCACTGATTTCCTCAATGACCCTGAAGATTATAGCACAAGCAACAATGACTTCATCAACAACAGTGCACAAATTGATCACATTACTAGTAGCTTTGAATCATGCTTAACTGAAAAAGATGGGGGGACAGAAATGGATATGCAATACAAATCTTCTAGCAATGTGACACCACAGACTTCAAGCAATGACAGCAACTCAGGAGTGGAGGAAAGAGAGGAGGACAGTGAAGAAGAAGGCACTGATTTGGGTGTCCAAAGCACTAATTTGGATGTCCATGACTTTAGGTTTCTGGACAACATTGCTCCACCTAGTTACTATTCTCCTTTTGAGATGGCTGAAGAGATGGAGGAGGAGCCTGTGGAGCCTGAGAATGAGAACTATGGTGATGAGCCTTCAATGCTTAGAGCTTTGATGAAGAGAATGACATATGAGAGGAAGTTCTCAGCTTCTCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGGAAACATGAAGGGAAGAGGACTAGCTGATCAATTAACAAATCTCCAAATGGCTTGTAGCAAAAACAAACTTGAGAAGAATAATGAGGAGAAAGAATACATGGGAACAATGGATAGGAAACAGGAAGAAGAACACCAGCAAACATCACCTGACATGGATTCTTCTAGTGTTGATGGGGAACTGTTGCTTTGGAATTCACTTGACCTTCCTCCTATTTGCTTTGTTAACTTACTAGAAAACGGTTCATTCAATTAG 1260 0.4365 MARKRKVAEVVEERNLCEGTMGWDEMMKQAAALGGVQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNNNTCSSSSSSTSSTSLLINHQQMQQQVDAYGAGSTQFSIDQFTDFLNDPEDYSTSNNDFINNSAQIDHITSSFESCLTEKDGGTEMDMQYKSSSNVTPQTSSNDSNSGVEEREEDSEEEGTDLGVQSTNLDVHDFRFLDNIAPPSYYSPFEMAEEMEEEPVEPENENYGDEPSMLRALMKRMTYERKFSASLYAFNGIPECLKLKLESGNMKGRGLADQLTNLQMACSKNKLEKNNEEKEYMGTMDRKQEEEHQQTSPDMDSSSVDGELLLWNSLDLPPICFVNLLENGSFN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02454 419 MobiDBLite consensus disorder prediction 205 255 - -
Pumo2g02454 419 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Pumo2g02454 419 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Pumo2g02454 419 MobiDBLite consensus disorder prediction 214 233 - -
Pumo2g02454 419 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Pumo2g02454 419 MobiDBLite consensus disorder prediction 369 384 - -
Pumo2g02454 419 MobiDBLite consensus disorder prediction 369 391 - -
Pumo2g02454 419 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 315 - -
Pumo2g02454 419 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Pumo2g02454 419 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Pumo2g02454 419 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Pumo2g02454 419 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Pumo2g02454 419 Coils Coil 419 419 - -
Pumo2g02454 419 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Pumo2g02454 419 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02454 Pumo-Chr2 53257467 53258726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02454 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.29e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo2g02454 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02454 K09286 - gmx:100786711 731.865