Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02452 ATGGACAGATCAACTGGCCGTGGTGGAAGTGTGGACATGTTTCTACCAAATTATAAGTTGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAGGTGAAAATTGCAGAGCATGTACTGACTGGTCATAAAGTTGCTATAAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAGTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATACGGCTTTATGAGGTCATAGAAACCCCAACAGACATATATGTTGTCATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAGAAGGGTAGGTTGCAAGAGGATGAAGCCCGCCATTTTTTTCAGCAGATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACTTGAAGCCTGAGAATTTACTTTTGGACTCAAAATTTAATATCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCTAACTATGCGGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATACGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGGGTGGCATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTGGATCCCATGAAGAGGATGACCATACCTGAGATACGTCAACACCCATGGTTCCAAGTTCGTCTGCCGCGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGATTGACTGA 882 0.4104 MDRSTGRGGSVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRHKIKNMEMEEKVRREIKILRLFMHHHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQVRLPRYLAVPPPDTLQQAKKID 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02452 293 PIRSF STPK_Pim-1 7 280 IPR017348 GO:0004674|GO:0006468|GO:0043066
Pumo2g02452 293 Gene3D Transferase(Phosphotransferase) domain 1 10 290 - -
Pumo2g02452 293 CDD STKc_AMPK_alpha 15 270 - -
Pumo2g02452 293 SUPERFAMILY Protein kinase-like (PK-like) 15 279 IPR011009 -
Pumo2g02452 293 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Pumo2g02452 293 Pfam Protein kinase domain 18 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02452 293 FunFam Non-specific serine/threonine protein kinase 10 293 - -
Pumo2g02452 293 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 16 272 - -
Pumo2g02452 293 FunFam Non-specific serine/threonine protein kinase 4 99 - -
Pumo2g02452 293 ProSiteProfiles Protein kinase domain profile. 18 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02452 293 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Pumo2g02452 293 SMART serkin_6 18 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02452 Pumo-Chr2 53241233 53251210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02452 18 270 CBL-interacting serine-threonine protein kinases AT4G24400 52.362 4.55e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Pumo2g02452 Pkinase 9.2e-81 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02452 K07198 - gmx:547544 587.03