Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02441 ATGGCGGCGGCGGCGAAACCCCAACGCACTCCACAGGAAGTGGAAGACATCATCATCCGCAAAATCTTCCTCGTCTCCATAACCGAAATCGCCACCACCGCAACCACCGATTCGAGAATCGTGTATTTGGAACTAACCGCCGCGGAGATTCTCAGCGAGGGCAAAGAGCTCCGCCTCTCGCGCGATTGCATGGAGAGGGTTTTAATCGACCGTCTCTCCGGCGAATTCGCCGGCGCCGGTGACGAGTCTCCGTTTCAGTACCTCATCGGATGCTACCACCGCGCGCACGAGGAGGGGAAGAAAATCGCGAACATGAAGGACAAAGGGTTACGGTCGGAGATGGAGGCGGTGGTGAGGCAGGCCAAGAAGCTCTGCGTCAACTACTGCCGGATTCATCTCGCGAATCCCGAGCTCTTTTCGAGCCAGGGTTCGGCGAATTCTGGCGCCAATTCGCCGCTGCTGCCGCTGATTTTTGCGGAGGTTGGCGGTGGGAACGTGTTCGGTGGTGGCGGCGGTGGAGGGGCCAAGAGTCCGCCGGGGTTTCTGGAGGAGTTTTTCAGGGACCCTGATTTTGATAGCTTGGACCGGATTCTGAAGGGGCTGTATGAGGAGTTGAGAGGGAGTGTGATGAAGGTGTCTGCTCTTGGGAACTTTCAGGACTCATTGAGGGCTTTGTTGTATTTGGTTAGGTTTCCCATTGGTGCCAAGTCGCTTGTGAATCACGAGTGGTGGATTCCCAAAGGGGTTTATATGAATGGCCGTGCTATTGAGATGACCAGCATTTTGGGACCCTTTTTACATATCAGTGCTCTTCCTGATCAAGCCTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCTGCTGATTTGTTATCTTCATTTTCCACTATCAAAACTGTCATGAACAACTTGTATGATGGCCTAGCTGAAGTACTCCTCATCCTCCTTAAAAGTACAGATACTCGTGAAAATGTACTGGAGTATCTTGCGGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCACATTTGTAAATCTCAGTGCTGTCATGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATCTAACAAAAAGAGATAAAATTGATGCAAAATATGTGCACTACTCAAACCGCTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTACTGAATGGCTTAATAGTAAAAACCCAGCTAAGACTGGGGCAACCAATCAATATAATGATGATCAGAAACGCTTGCAACAATCCCAAGAGGCCAGTAGTTCTGGTAATAATGCTGGTGAGCACTCAAATGAAAATTCTGCACGTGCTGAAAAGACCAAATATTCATTTATTTGTGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGGTGTGAAGATGCTCTCGCCACACTTAAAGCCATGCAGGAGCGGACACCCACTCCTCAGGCAGAATTGGATATAAATCGACTTGAGAAAGAAATGGAGTTGTACTCACAGGAAAAACTATGTTATGAAGCTCAGATGTTGAGGGATAACACACTTATTCAAAATGCGCTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTGGGTGGATTTAAGATGCCTCTAGCACCAACTTGCCCAATGGAATTTGCTGCCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTGGATGGAGTTGTGCTGGATGAATTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATACCTTAGAGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCCCGTAGGAGCGGCTCAACTGCTACAGCCACTCTATTTGAAGGCCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTACGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGCCATAATATTGCTGAACTCCTCGAATACCTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAGAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACGGCTGAGTGGGATCGACGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCCGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCTCAAAGAAAATCGCTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGCTAAAACAGATAGTGCACATATATGTTCATCTAGCTAGGGGTGACACGAATTCCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCAGCAGATGTCCTTCACAGAATTGGTGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGCGCTAAAGCTAAAGTTGCTGCTTCAGAGGCCATGGATACAGAAGCTACTCTAGGGGAGATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCATTCAACCGTTCTCATCTTACTGTGGATATGTTGATTCCCGATGATGAGCTAAAAGCAAGAATTGAAGAATTTGTCAGGTCTCAGGAAATGAAGAAACACGTAAGCCTACAGAGTACCAAGGCCACAATTCAGACTACAAATGGGGAAATGTTGATTGATTAG 3114 0.4515 MAAAAKPQRTPQEVEDIIIRKIFLVSITEIATTATTDSRIVYLELTAAEILSEGKELRLSRDCMERVLIDRLSGEFAGAGDESPFQYLIGCYHRAHEEGKKIANMKDKGLRSEMEAVVRQAKKLCVNYCRIHLANPELFSSQGSANSGANSPLLPLIFAEVGGGNVFGGGGGGGAKSPPGFLEEFFRDPDFDSLDRILKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPIGAKSLVNHEWWIPKGVYMNGRAIEMTSILGPFLHISALPDQAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSTDTRENVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLKLSGLTALHASSEEVTEWLNSKNPAKTGATNQYNDDQKRLQQSQEASSSGNNAGEHSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALATLKAMQERTPTPQAELDINRLEKEMELYSQEKLCYEAQMLRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLAPTCPMEFAAMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWDRRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISKDGRSYNDQLFSAAADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTVDMLIPDDELKARIEEFVRSQEMKKHVSLQSTKATIQTTNGEMLID 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02441 1037 MobiDBLite consensus disorder prediction 419 461 - -
Pumo2g02441 1037 SUPERFAMILY RING/U-box 934 1013 - -
Pumo2g02441 1037 ProSiteProfiles U-box domain profile. 941 1015 IPR003613 GO:0004842|GO:0016567
Pumo2g02441 1037 FunFam Ubiquitin conjugation factor e4 a 941 1019 - -
Pumo2g02441 1037 Pfam Ubiquitin elongating factor core 262 925 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Pumo2g02441 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 941 1020 IPR013083 -
Pumo2g02441 1037 Coils Coil 520 547 - -
Pumo2g02441 1037 MobiDBLite consensus disorder prediction 419 458 - -
Pumo2g02441 1037 PANTHER UBIQUITINATION FACTOR E4 5 1017 IPR045132 GO:0000151|GO:0030433|GO:0034450
Pumo2g02441 1037 SMART Ubox_2 945 1008 IPR003613 GO:0004842|GO:0016567
Pumo2g02441 1037 Pfam U-box domain 942 1013 IPR003613 GO:0004842|GO:0016567
Pumo2g02441 1037 CDD RING-Ubox_UBE4A 944 1012 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02441 3 1037 U-box Gene Family AT5G15400 75.358 0.0 1619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02441 K10597 - gmx:100806175 1940.62