Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02434 ATGTTTTCTTCTTCTTCTTCTCATATCAGTTCAGTGATCAAATGGAATTCCCTGGCACAATTTCTCTTCCTCGTGGTGTTTTTCCTCTTCGCGTCGCGAAACGACGCCGTTTCGCCCGATTCGGACAAATCCGCGCTCCTCCGCCTAAAGGCCTCGCTCTCCGACCCCGCCGGCGTCCTCTCCACGTGGACCGCCGCCGCCGCCGCTGACTCCAGCCACTGCTCCTTCTCCGGCGTCCTCTGCGACGCGAACTCCCGAGTCGTCGCCGTCAACGTCACCGGCTCCGGCGGCAGCAACCGAACATCTCAGCCGTGCTCCGATTTCGCTCAATTCCCCTTCTACGGCTTCGGAATTCGGCGAACCTGCGACGGTAGCAAAGGTTCTCTCTTCGGAAACGCTTCTTCTCTGAATTTCATCGCCGAGCTCAAGGAGCTTAGGGTTTTGTCCCTTCCCTTCAACGCGCTAGAGGGTGAAATCCCTGACGCGATTTGGGGCATAGAGAAGCTGGAGGTTCTTGATTTAGAAGGGAATTCGATAAGTGGCTATCTTCCCTTGAGAATCAATGGCTTGAAGAACTTGAGGGTTCTGAATCTAGGGTTTAATAGGCTTGTTGGGGAGATACCTAGTTCAATTGCGTCTCTTGAGAGTTTGGAGGTTTTGAATTTAGCTGGTAATGAATTGAATGGTTCTGTGCCGGGTTTTGTAGGGAGACTTAGAGGGGTGTATCTGTCGTTTAATCAGCTTGGTGGGGTTATTCCAAGAGAGATTGGTGAGAATTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGGAATTCAATTGTTCACGGGATTCCGGGGAGTTTGGGGAATTGTGGGAGGTTGAGGACGCTTTTGTTGTATTCCAATATGTTGGAAGAGGGTATTCCGGTTGAGATTGGGAGGCTTAAGAGCCTTGAGGTGTTGGATGTTTCCAGGAACATTCTCAGTGGCTCTGTGCCGAGTGAGCTTGGGAATTGCTCAGAGTTGAGGGTTCTTGTGCTGTCGAATCTCTTCGATCCGCGTGGGGATGTTGCTGCTGCTGGTGCTGGTGATTTGGGAAAATTGGGGTCTGTGAATGAACAGTTGAATTATTTTGTAGGGGCAATGCCCGAGGAGGTTTTGTCGCTTCCCAAGTTGAGGATATTGTGGGCTCCTATGGTGACTTTGGAAGACGGGTTACAGGGAAGTTGGGGTGGTTGTGAGAGCTTGGAGATGGTCAATTTGGCTCAGAATTTTTTCAGTGGGGAGTTTCCAAACCAGCTTGGTGCTTGCAAGAAGCTGCATTTTCTTGATTTAAGCTCGAATAACCTTACTGGTGAACTTTCTGAGGAACTTCGTGTTCCCTGTATGAGTGTGTTTGATGTTAGTGGCAACATGTTATCTGGTTCAGTTCCTGATTTCTCCTACAATGCTTGTCCCCCTGTTCCTTCGTGGAATGGAAATCTGTTTCAAGATGACAATGCTTCCCCGCCATATGCATCCTTTTTTTTGTCAAAGGTTCGTGAGAGATCGCTTTACACATCAATGGGGGGAGTTGGTACTTCTGTTGTTCACAACTTTGGGCAAAACAGCTTTACTGGCATTCAGTCATTGCCAATAGCACATGACAGGCTGGGGAAGAAGAGCGGTTACACATTTCTTGTTGGTGAAAATAATCTTACCGGACCTTTTCCTACTTTTTTATTTGAGAAATGTGATGAATTAGATGCATTGCTTTTAAATGTCAGTTATAATAGGATATCTGGTCATATTCCTTCCAATTTTGGTGGAGTATGCAGATCATTAAAAATTTTTGATGCGTCTGGAAATCAACTTGCAGGACCGATTCCCCTTGATTTAGGGAATTTGGTCTCTCTTGTATCTCTGAACCTCAGTAGGAATCAGTTACAAGGCGAGATTCCCACCAACCTTGGCCAGATGAAGAATCTGAAGTTTCTTTCTTTGGCAGGTAATAAGTTAAATGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTAGAAGTCTTGGACCTTTCTTCAAACTCTCTTACTGGTGAGATTCCAAAGGCTATTGAAAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCACATTCCTATTGGTCTGGCACATGTCGCCACACTCTCAGCATTCAATGTGTCTTTCAACAACTTATCTGGATCCTTGCCTTCACATAGTGGCTTGATTAAATGCAGCAGTGCTGTTGGGAATCCGTTTCTAAGTCCCTGCCGTGGAGTTTCTCTGAGTGTGCCATCAGGGAATCAACTAGGGCCGATTGATGGCAACTCTTATAATACGGCAACAGCACAAGCTAATGACAAGAAGAGTGAGAATGGCTTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTTCTTATAGCCCTGATTGTTCTATTCTTTTACACTCGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGTTCTATAAGAAAAGAAGTTACAGTGTTTACTGATATTGGAGTCCCATTGACATTTGAAACAGTTGTCCAAGCCACAGGAAACTTCAATGCAGGCAACTGTATTGGGAGTGGAGGTTTTGGCACAACATACAAGGCAGAGATATCACCAGGAATCCTGGTGGCAGTCAAACGACTCGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCTGAGATCAAGACCCTTGGGAGGCTTCATCATCCAAATCTTGTCACTCTGATTGGTTATCACGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCAGGTGGTAATCTCGAAAAGTTTATCCAGGAGAGGTCCACAAGGGCTGTGGATTGGAAAATTCTTTACAAGATTGCATTGGACATAGCCCGCGCACTCGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCATCGCGATGTCAAGCCCAGCAACATCTTGTTGGATGATGATTTCAATGCTTATCTATCTGACTTTGGATTGGCTAGACTTCTGGGAACTTCAGAGACACATGCTACCACTGGTGTGGCCGGAACATTCGGCTATGTTGCTCCTGAATATGCCATGACTTGCCGTGTTTCTGATAAAGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCTTATGGAAATGGTTTCAACATAGTGGCATGGGCATGCATGCTACTGAAGCAAGGGAGAGCAAAGGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGATGATTTGGTAGAAGTGCTTCACTTAGCAGTTGTGTGTACTGTTGACTCTCTCTCTACCAGACCTACAATGAAACAGGTTGTAAGAAGGCTTAAGCAACTTCAACCCCCATCATGCTAG 3420 0.4611 MFSSSSSHISSVIKWNSLAQFLFLVVFFLFASRNDAVSPDSDKSALLRLKASLSDPAGVLSTWTAAAAADSSHCSFSGVLCDANSRVVAVNVTGSGGSNRTSQPCSDFAQFPFYGFGIRRTCDGSKGSLFGNASSLNFIAELKELRVLSLPFNALEGEIPDAIWGIEKLEVLDLEGNSISGYLPLRINGLKNLRVLNLGFNRLVGEIPSSIASLESLEVLNLAGNELNGSVPGFVGRLRGVYLSFNQLGGVIPREIGENCGKLEHLDLSGNSIVHGIPGSLGNCGRLRTLLLYSNMLEEGIPVEIGRLKSLEVLDVSRNILSGSVPSELGNCSELRVLVLSNLFDPRGDVAAAGAGDLGKLGSVNEQLNYFVGAMPEEVLSLPKLRILWAPMVTLEDGLQGSWGGCESLEMVNLAQNFFSGEFPNQLGACKKLHFLDLSSNNLTGELSEELRVPCMSVFDVSGNMLSGSVPDFSYNACPPVPSWNGNLFQDDNASPPYASFFLSKVRERSLYTSMGGVGTSVVHNFGQNSFTGIQSLPIAHDRLGKKSGYTFLVGENNLTGPFPTFLFEKCDELDALLLNVSYNRISGHIPSNFGGVCRSLKIFDASGNQLAGPIPLDLGNLVSLVSLNLSRNQLQGEIPTNLGQMKNLKFLSLAGNKLNGSIPTSLGQLYSLEVLDLSSNSLTGEIPKAIENMRNLTDVLLNNNNLSGHIPIGLAHVATLSAFNVSFNNLSGSLPSHSGLIKCSSAVGNPFLSPCRGVSLSVPSGNQLGPIDGNSYNTATAQANDKKSENGFSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSIRKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGSGGFGTTYKAEISPGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWKILYKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLKQGRAKEFFTAGLWEAGPGDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02434 1139 Gene3D Phosphorylase Kinase; domain 1 824 935 - -
Pumo2g02434 1139 SUPERFAMILY L domain-like 137 256 - -
Pumo2g02434 1139 Gene3D Ribonuclease Inhibitor 39 238 IPR032675 -
Pumo2g02434 1139 PRINTS Leucine-rich repeat signature 670 683 - -
Pumo2g02434 1139 PRINTS Leucine-rich repeat signature 433 446 - -
Pumo2g02434 1139 Gene3D Ribonuclease Inhibitor 353 486 IPR032675 -
Pumo2g02434 1139 SUPERFAMILY L domain-like 237 738 - -
Pumo2g02434 1139 Pfam Leucine rich repeat N-terminal domain 39 82 IPR013210 -
Pumo2g02434 1139 ProSiteProfiles Protein kinase domain profile. 860 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02434 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 362 537 - -
Pumo2g02434 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 824 935 - -
Pumo2g02434 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 238 348 - -
Pumo2g02434 1139 SMART LRR_typ_2 214 236 IPR003591 -
Pumo2g02434 1139 SMART LRR_typ_2 190 213 IPR003591 -
Pumo2g02434 1139 SMART LRR_typ_2 308 332 IPR003591 -
Pumo2g02434 1139 SMART LRR_typ_2 622 646 IPR003591 -
Pumo2g02434 1139 SMART LRR_typ_2 670 694 IPR003591 -
Pumo2g02434 1139 SMART LRR_typ_2 142 166 IPR003591 -
Pumo2g02434 1139 SMART LRR_typ_2 260 284 IPR003591 -
Pumo2g02434 1139 FunFam Leucine-rich repeat receptor protein kinase EMS1 567 664 - -
Pumo2g02434 1139 SMART LRR_sd22_2 670 696 - -
Pumo2g02434 1139 SMART LRR_sd22_2 308 334 - -
Pumo2g02434 1139 SMART LRR_sd22_2 190 219 - -
Pumo2g02434 1139 SMART LRR_sd22_2 260 279 - -
Pumo2g02434 1139 SMART LRR_sd22_2 142 168 - -
Pumo2g02434 1139 SMART LRR_sd22_2 430 453 - -
Pumo2g02434 1139 SMART LRR_sd22_2 646 661 - -
Pumo2g02434 1139 SUPERFAMILY Protein kinase-like (PK-like) 844 1131 IPR011009 -
Pumo2g02434 1139 CDD STKc_IRAK 866 1134 - -
Pumo2g02434 1139 Pfam Protein kinase domain 863 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02434 1139 Gene3D Transferase(Phosphotransferase) domain 1 936 1136 - -
Pumo2g02434 1139 SMART serkin_6 860 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02434 1139 Pfam Leucine Rich Repeat 672 694 IPR001611 GO:0005515
Pumo2g02434 1139 Pfam Leucine Rich Repeat 192 214 IPR001611 GO:0005515
Pumo2g02434 1139 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515
Pumo2g02434 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 980 992 IPR008271 GO:0004672|GO:0006468
Pumo2g02434 1139 FunFam Leucine-rich repeat receptor protein kinase EMS1 665 747 - -
Pumo2g02434 1139 Gene3D Ribonuclease Inhibitor 500 769 IPR032675 -
Pumo2g02434 1139 Gene3D Ribonuclease Inhibitor 239 344 IPR032675 -
Pumo2g02434 1139 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 281 1133 - -
Pumo2g02434 1139 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 936 1138 - -
Pumo2g02434 1139 ProSitePatterns Protein kinases ATP-binding region signature. 866 888 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02434 Pumo-Chr2 52565354 52569224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02434 36 1139 Receptor kinase-like Gene Family AT3G02130 63.879 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Pumo2g02434 Pkinase 9.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02434 - - gmx:100819882 1961.81