Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02385 ATGGGGAGGGGAAGAGTGGAGCTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTTTGTAGCAGCAACAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGCCAAAGAGCTTGAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGGAAGATTTGAATCTCTTCAAAGGACCCAAAGAAACCTTCTAGGTGAAGACTTGGGCCCATTAAATACCAAAGAACTTGAGCAGCTTGAGAGGCAACTAGATTCATCTCTCAAGCAAGTGAGGTCCACAAAGACTCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTTGAAGCAAACAGAGCTTTGACCATGAAGCTGGATGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGAACAAAGTATGGCATATGGTACACAAAATGCTCACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAATCCCACATTGCAGATAGGTTCTGACTACAGGTACAACCCTGAAGCCTCTGATCAGCTAACTGCCACAACTCAAGCTCAACAAGTGAATGGGTTTATTCCTGGATGGATGCTTTGA 744 0.4435 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSNSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRALTMKLDEINSRNQYRQTWEAGEQSMAYGTQNAHSQGFFQPLECNPTLQIGSDYRYNPEASDQLTATTQAQQVNGFIPGWML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02385 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pumo2g02385 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo2g02385 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo2g02385 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo2g02385 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo2g02385 247 FunFam MADS-box transcription factor 1 13 87 - -
Pumo2g02385 247 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pumo2g02385 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo2g02385 247 Coils Coil 124 144 - -
Pumo2g02385 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo2g02385 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Pumo2g02385 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo2g02385 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo2g02385 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo2g02385 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02385 Pumo-Chr2 51667392 51672643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02385 1 247 MADS-box Gene Family AT5G15800 75.191 4.50e-127 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo2g02385 K-box 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02385 K09264 - gmx:100785322 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g02385 2 51667392 51672643 Pumo5g00676 5 13175548 13181244 PCT