Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02384 ATGGGGAGAGGGAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGCCGCCAAGTGACGTTTTCCAAAAGGAGAACTGGGCTGCGCAAGAAAGCTAATGAAATCTCTGTGCTCTGTGATGCTCAAGTAGCATTGATTGTGTTCAATGCTAAAGGGAAACTTTTTGAGTATTCATCTGAATCCAGCATGGAAAACGTCCTGGAACGATATGAGAGACATTCCCATATAGGGAAAGTAGTTGGAGATGGTGATGAATCACAGGGAAACTGGTCCTTACAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAGGAACTTGAGGAACTATGTGGGACAAGATCTGGATCCCTTGAACTTGAGAGAGCTTCAGAGTTTAGAGCATCAACTTGACACAGCTATAAAGCGCATTCCGAAATAG 423 0.4444 MGRGRVQLKQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSSESSMENVLERYERHSHIGKVVGDGDESQGNWSLQCFKLTGKVEVLERNLRNYVGQDLDPLNLRELQSLEHQLDTAIKRIPK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02384 140 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo2g02384 140 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo2g02384 140 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo2g02384 140 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo2g02384 140 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 138 - -
Pumo2g02384 140 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pumo2g02384 140 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Pumo2g02384 140 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo2g02384 140 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pumo2g02384 140 Pfam K-box region 85 138 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo2g02384 140 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pumo2g02384 140 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo2g02384 140 ProSiteProfiles K-box domain profile. 87 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo2g02384 140 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02384 Pumo-Chr2 51633206 51643739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02384 1 138 MADS-box Gene Family AT1G26310 63.830 6.12e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo2g02384 K-box 1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02384 K09264 - gmx:100820188 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00675 5 13156304 13168796 Pumo2g02384 2 51633206 51643739 PCT