Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02382 ATGTGCATTCAACTTCCTTCATCTATTCAAGGGGCAGCATCTATGACTTCGGCAGCATCACTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCATTACCATATGATGCAGAACCCAGATATTTCCGCTCACAGCGTGATGGACTAGTTTCGAGGCGTGAAAAGGGTTCAAGTCATTCAAATGAGGAAACAGAACCTCTAAGAAGTGATGCAGATGTGGATCCAGAATCTTTGAATTCAGTAGACAAATGGAATGAAAGTGCCTGTGAAGCTGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAGAGTTCAGTCAACAAAATATTCAACTGGAGTTGGTCTTGTCTATGCATCATCAGAGGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGCGGAAAGGGTAGGGGTAATATGTCTTTTGTGTCATGCTTAATAACTATTGGTTTGTTGACAGGTGATGGTATTCGATGA 585 0.4154 MCIQLPSSIQGAASMTSAASLDNSLSDMYRSPPRPLPYDAEPRYFRSQRDGLVSRREKGSSHSNEETEPLRSDADVDPESLNSVDKWNESACEAGSKEYRSKSSLRVQSTKYSTGVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKGRGNMSFVSCLITIGLLTGDGIR 194
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02382 194 MobiDBLite consensus disorder prediction 43 80 - -
Pumo2g02382 194 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 12 171 - -
Pumo2g02382 194 MobiDBLite consensus disorder prediction 24 80 - -
Pumo2g02382 194 Pfam RING-H2 zinc finger domain 124 169 IPR024766 GO:0008270
Pumo2g02382 194 CDD RING-H2_AIRP1-like 125 171 - -
Pumo2g02382 194 SMART ring_2 129 169 IPR001841 -
Pumo2g02382 194 SUPERFAMILY RING/U-box 124 171 - -
Pumo2g02382 194 ProSiteProfiles Zinc finger RING-type profile. 129 169 IPR001841 -
Pumo2g02382 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 173 IPR013083 -
Pumo2g02382 194 FunFam E3 ubiquitin-protein ligase At3g02290-like 106 176 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo2g02382 Pumo-Chr2 51609717 51615776 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02382 5 171 C3H Transcription Factor Family AT5G15790 64.162 1.06e-69 210
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02382 - - gmx:100777068 339.347