Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo2g02382 | ATGTGCATTCAACTTCCTTCATCTATTCAAGGGGCAGCATCTATGACTTCGGCAGCATCACTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCATTACCATATGATGCAGAACCCAGATATTTCCGCTCACAGCGTGATGGACTAGTTTCGAGGCGTGAAAAGGGTTCAAGTCATTCAAATGAGGAAACAGAACCTCTAAGAAGTGATGCAGATGTGGATCCAGAATCTTTGAATTCAGTAGACAAATGGAATGAAAGTGCCTGTGAAGCTGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAGAGTTCAGTCAACAAAATATTCAACTGGAGTTGGTCTTGTCTATGCATCATCAGAGGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGCGGAAAGGGTAGGGGTAATATGTCTTTTGTGTCATGCTTAATAACTATTGGTTTGTTGACAGGTGATGGTATTCGATGA | 585 | 0.4154 | MCIQLPSSIQGAASMTSAASLDNSLSDMYRSPPRPLPYDAEPRYFRSQRDGLVSRREKGSSHSNEETEPLRSDADVDPESLNSVDKWNESACEAGSKEYRSKSSLRVQSTKYSTGVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKGRGNMSFVSCLITIGLLTGDGIR | 194 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo2g02382 | 194 | MobiDBLite | consensus disorder prediction | 43 | 80 | - | - | |
Pumo2g02382 | 194 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 12 | 171 | - | - | |
Pumo2g02382 | 194 | MobiDBLite | consensus disorder prediction | 24 | 80 | - | - | |
Pumo2g02382 | 194 | Pfam | RING-H2 zinc finger domain | 124 | 169 | IPR024766 | GO:0008270 | |
Pumo2g02382 | 194 | CDD | RING-H2_AIRP1-like | 125 | 171 | - | - | |
Pumo2g02382 | 194 | SMART | ring_2 | 129 | 169 | IPR001841 | - | |
Pumo2g02382 | 194 | SUPERFAMILY | RING/U-box | 124 | 171 | - | - | |
Pumo2g02382 | 194 | ProSiteProfiles | Zinc finger RING-type profile. | 129 | 169 | IPR001841 | - | |
Pumo2g02382 | 194 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 173 | IPR013083 | - | |
Pumo2g02382 | 194 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 106 | 176 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo2g02382 | Pumo-Chr2 | 51609717 | 51615776 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo2g02382 | 5 | 171 | C3H Transcription Factor Family | AT5G15790 | 64.162 | 1.06e-69 | 210 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo2g02382 | - | - | gmx:100777068 | 339.347 |