Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02374 ATGGTTCGTCAAGCTGATTTAGTTATCATTGGTGTTTCTGTTGGTTTGGCCCTTGGAATTCTGATATCTTGCCTCATATTTTTCGGCATAAGGTGGTACAAGAAACGTGCTCATATTAGACGATCTGCAAATGAGTCTAGTTTAACTACTCTTCCAATACGAACAAATGGATTGGGAACAAGTACTGACTTTAGTGCATCTCTTGATAGTTCCATAGCCACGTCAAGGTCAGAAAATCTAAAGAAAAATTCCCATTTTACTTGGTGGAATCATCAAAATAAAGATCGGTTTGCTTCAGCATCAGGCATTCTTAAGTATTCGTACAAAGAAATTCAAAAGGCCACACAAAATTTCACAACTACATTGGGACAAGGATCATTTGGCACAGTTTATAAAGCGACAATGCCTACAGGGGAGGTTGTAGCAGTGAAGGTGCTTGCACCCAATTCCAAACAAGGGGAGAAGGAATTCCAAACAGAGGTATTTCTGCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGACACCGCATACTGGTTTATCAATACATGAGTAATGGAAGTTTGGCAAATCTTTTATATGGTGAAGAAAAGGAATTGAGTTGGGATCAAAGGCTGCAAATTGCTCTTGATATTTCACAGGGAATAGAATACCTTCATGAAGGAGCAGTCCCACCTGTCATACATCGCGATTTAAAGTCAGCCAACATATTGCTAGATCACTCTATGAGAGCTAAGGTTGCTGATTTTGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGGAATTCCGGTCTCAAAGGTACATATGGCTACATGGATCCCGCATACATTTCCACAAGCAAGTTAACAACGAAGAGTGACATATACAGTTTTGGTATCATAGTGTTTGAGCTCATCACTGCCATCCACCCACATCAGAATTTGATGGAATATGTTAACCTTGCTGCAATGGATCATGATGGTGTAGATGAGATACTTGACAAGCAACTTGTTGGAAAGTGCAATCTTGAAGAAGTAAGGCAGCTTGCTAAAATTGGACACAAATGCTTGCACAAATCACCTAGGAAACGCCCCTCTGTAGGTGAAGTTTCACAGTTTATATCAAGAATAAAGCAAAGGCGACAGCGCCGTCTAACAGAAGATAACTTGTCATTTGCAAGCAACAACTTTTCTCGAGCTGTGAGTCGGTTAGAAGATCGACAGGTTGAACTAAGTAGGATGTCAACCATTAACCTCACAGAAACTGTATGA 1275 0.4047 MVRQADLVIIGVSVGLALGILISCLIFFGIRWYKKRAHIRRSANESSLTTLPIRTNGLGTSTDFSASLDSSIATSRSENLKKNSHFTWWNHQNKDRFASASGILKYSYKEIQKATQNFTTTLGQGSFGTVYKATMPTGEVVAVKVLAPNSKQGEKEFQTEVFLLGRLHHRNLVNLVGYCVDKGHRILVYQYMSNGSLANLLYGEEKELSWDQRLQIALDISQGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTKSDIYSFGIIVFELITAIHPHQNLMEYVNLAAMDHDGVDEILDKQLVGKCNLEEVRQLAKIGHKCLHKSPRKRPSVGEVSQFISRIKQRRQRRLTEDNLSFASNNFSRAVSRLEDRQVELSRMSTINLTETV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02374 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Pumo2g02374 424 Gene3D Transferase(Phosphotransferase) domain 1 192 401 - -
Pumo2g02374 424 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Pumo2g02374 424 SMART serkin_6 116 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02374 424 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 401 - -
Pumo2g02374 424 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 90 191 - -
Pumo2g02374 424 Pfam Protein kinase domain 120 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02374 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Pumo2g02374 424 SUPERFAMILY Protein kinase-like (PK-like) 103 388 IPR011009 -
Pumo2g02374 424 CDD STKc_IRAK 122 378 - -
Pumo2g02374 424 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 383 - -
Pumo2g02374 424 ProSiteProfiles Protein kinase domain profile. 116 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02374 424 Gene3D Phosphorylase Kinase; domain 1 78 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02374 Pumo-Chr2 51265322 51270563 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02374 102 375 Receptor kinase-like Gene Family AT3G19300 42.403 4.38e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Pumo2g02374 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02374 - - gmx:100819995 814.683