Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02365 ATGGAAGTGGATCATGTGGAGGTTAAATCTGATCAGCAACAAACTAAAAATTTGCTTTTTACTTTAGAAATTGACCTGGATCATGACAGTTATTTTTCCGAGCTTGAGAGGAAAGTGCAGACATTGCAAACAGAAGCAACATCCTTGTCTGCACAATTAAGTCTCTTGCAGAGATTTGCTCTCTCTGTAACTGAAGTTGGTTCTTTGATAACCATGGGTGCTCAAGATTCCTGTGATTTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGAAAGAGCTTATCAATTAAGCCTCATGCAAATGCCTACTTTATCTTTGTGTCTTTGATGACTGTTGTCAACAACATGTTAAATACCAAAGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCACTACTGTACTCTTTCATATTTGGCTTTGTATTCTGAAACTGGTTCATCATTTGGCTTAA 489 0.3783 MEVDHVEVKSDQQQTKNLLFTLEIDLDHDSYFSELERKVQTLQTEATSLSAQLSLLQRFALSVTEVGSLITMGAQDSCDFFHDPSMLSSNAGQVRKSLSIKPHANAYFIFVSLMTVVNNMLNTKDYFSVPVTTAEFAVMKTACTTVLFHIWLCILKLVHHLA 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02365 162 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 57 150 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pumo2g02365 162 SUPERFAMILY ssDNA-binding transcriptional regulator domain 57 150 IPR009044 GO:0003677|GO:0006355
Pumo2g02365 162 Gene3D Transcriptional Coactivator Pc4; Chain A 33 156 IPR009044 GO:0003677|GO:0006355
Pumo2g02365 162 Coils Coil 32 52 - -
Pumo2g02365 162 Pfam Whirly transcription factor 57 141 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02365 Pumo-Chr2 51021195 51023828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02365 57 161 Whirly Transcription Factor Family AT1G71260 63.810 6.51e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pumo2g02365 Whirly 2.8e-27 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02365 K26561 - gmx:100817863 158.303