Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02349 ATGTCTAATCATCATCATCATCATTCCTCCAATCCCTTCGCATCATCCTCATCCACTCACTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAGACTCCCTCTCGCATCTGCTCCTGCGACGACACTGACATAAACCCCTTCTCCGGCGTCGTTTGCGACCTCCACCGCACGGAGCAGGTGTTAGGGTTAGGGTTTGGTGTTGGAATTGATCCCCAAAGCCAAACAAATGGTGATAATCATCGTCGTGATAGGGTTTTCGATGCTGATAGGGTTTTCAATTTCGCGGTGGGGGATGGTTCTGGCGGGCTTAGGGTTGTAGGGTTTGGTTCGGATTCCGATTCGAGTAGCGAGGAGGGTGGGGTTCGTGATGGTGGTGGATTTGAAGACTTTGATGTTCGGTTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACGCTGAATGAGGGGTTTGAATGGGAGGAGGTGGAGGAGAGGGTGAATGAGAGGGAGGATTTGGGGTTGGTGGTTGATGAGGTTGAAATTGAAGGTGATGATGATGGGAATTCGGTGGCGTCAGGGTTTACTAATGCCGGTGAGGAGGAAGAAGAGGAGGAGGAGGACGCCGGGGAAGAGGCGCTGAGGTATCTTGAATGGGAGATTCTCTTGGCGGTTAACAATTCGGAGAGGAATGTGAATGGTGTGTTGGAGCATGAGGGCAATGCTGGTGGTGGTGCTGATTTGTTGACAATTCAGGATGGTTATGTGTATGCGGCCGAGTATGATGTTTTGTTCGGGCAGTTTCTTGAGAGTGAGAGTGCCTTGAAGGGCAGCCCTCCGGCTGCGAAGAGTGTTGTGGAGAGTCTCCCGTTGGTGGAGTTGTCGAAGGAGGAGTTGTTGCAGGGGAACAATGTGGCGTGCGCCATTTGCAAGGATGAGATTTTGTTGGAGGAGAAGGTAAGGAGACTGCCTTGCTCACATTGTTATCATGGGGACTGCATTTTGCCGTGGTTGGGCATTCGCAACACGTGCCCGGTTTGCCGGTTTGAGCTGCCCACGGATGATCCGGACTATGAGCAGAGGAAGGTCCACAGGGCTGCTCATGATCTGCTGGAGCTTGCAGCAGCGCGGATGCAATTTTGA 1140 0.5228 MSNHHHHHSSNPFASSSSTHSDSDSDSVSCFVTDLFETPSRICSCDDTDINPFSGVVCDLHRTEQVLGLGFGVGIDPQSQTNGDNHRRDRVFDADRVFNFAVGDGSGGLRVVGFGSDSDSSSEEGGVRDGGGFEDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNEREDLGLVVDEVEIEGDDDGNSVASGFTNAGEEEEEEEEDAGEEALRYLEWEILLAVNNSERNVNGVLEHEGNAGGGADLLTIQDGYVYAAEYDVLFGQFLESESALKGSPPAAKSVVESLPLVELSKEELLQGNNVACAICKDEILLEEKVRRLPCSHCYHGDCILPWLGIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELAAARMQF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02349 379 Pfam Ring finger domain 306 347 IPR001841 -
Pumo2g02349 379 SMART ring_2 306 346 IPR001841 -
Pumo2g02349 379 MobiDBLite consensus disorder prediction 183 210 - -
Pumo2g02349 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 353 IPR013083 -
Pumo2g02349 379 MobiDBLite consensus disorder prediction 1 22 - -
Pumo2g02349 379 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Pumo2g02349 379 SUPERFAMILY RING/U-box 293 354 - -
Pumo2g02349 379 FunFam E3 ubiquitin-protein ligase RING1-like 266 353 - -
Pumo2g02349 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 195 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02349 Pumo-Chr2 50579742 50581616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02349 218 361 C3H Transcription Factor Family AT3G02340 52.866 1.83e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02349 - - gmx:100789524 591.652