Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02346 ATGAGGAAACCTGATATGATGGGAAAAGACAAAATGAACAACAACAACAATAACAACATTAAGAGCAAGCTAAGGAAGGGGTTGTGGTCACCTGAGGAAGATGAAAAACTCATAAGGTACATGATCACTAAGGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGACTTCAAAGGTGCGGCAAAAGTTGCCGTCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTGCACTCCATTCTTGGCAACAGATGGTCTCAGATTGCGGCACGTCTCCCTGGTCGCACAGACAATGAGATCAAGAATTTCTGGAACTCCACGCTCAAGAAAAGGTTGAAAATGAACAGCACTTCATCACCAAACAACAGTGACTCATCAGACCCTAGAGATCATGTCATGGGTGGTGGGATCATGCCCATGAACGAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCCACATCATCATCATCCATGCAATCCATGCATGCCAACATGGTCCTAACTGACCAATTTGACCCTTTTCCCTTGTTGTCGACCAACAACCGTTATGATATGACCGGTTCAGCCTGTTTCCTTGACAACATGGCTGCTGCATGCTTAACCCAAGTTGGCATGGTAGATCATGATAGTGGGGTTGTTCATGGTAGTTATGGGACAATATTGGAGCCTAACAAAACGGGGTTAGAAAGCGACTTTTCCCTTCCTCCACTAGAGAGTAGAAGCATTGAGGACAATGGTAGTACCCCAATTGATGTGAAGAGCCATAACAACAACCACTTCAAGAATAGTTGCTTCAATAACACTGATCATCATCATAATATTCAAAGCTCCAACAACGTAATTGTAGAGGATTTGTTTGGGTTTGGAAATCATGGGCAAGGGGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGCTTGATGCAAGACATGTCCTATTTTCCTTCCCTTGATTTCCAAGTTTAA 1023 0.4389 MRKPDMMGKDKMNNNNNNNIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKMNSTSSPNNSDSSDPRDHVMGGGIMPMNEHDLMTMCMDSSSSTSSSSMQSMHANMVLTDQFDPFPLLSTNNRYDMTGSACFLDNMAAACLTQVGMVDHDSGVVHGSYGTILEPNKTGLESDFSLPPLESRSIEDNGSTPIDVKSHNNNHFKNSCFNNTDHHHNIQSSNNVIVEDLFGFGNHGQGENFRMGEWDFEGLMQDMSYFPSLDFQV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02346 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Pumo2g02346 340 PANTHER MYB DOMAIN PROTEIN 55 17 293 - -
Pumo2g02346 340 MobiDBLite consensus disorder prediction 130 144 - -
Pumo2g02346 340 CDD SANT 81 124 IPR001005 -
Pumo2g02346 340 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Pumo2g02346 340 MobiDBLite consensus disorder prediction 1 22 - -
Pumo2g02346 340 MobiDBLite consensus disorder prediction 130 152 - -
Pumo2g02346 340 CDD SANT 29 73 IPR001005 -
Pumo2g02346 340 FunFam Transcription factor MYB46 80 147 - -
Pumo2g02346 340 FunFam MYB transcription factor 23 79 - -
Pumo2g02346 340 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Pumo2g02346 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Pumo2g02346 340 Gene3D - 80 148 - -
Pumo2g02346 340 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Pumo2g02346 340 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Pumo2g02346 340 Gene3D - 23 79 - -
Pumo2g02346 340 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Pumo2g02346 340 SMART sant 78 126 IPR001005 -
Pumo2g02346 340 SMART sant 25 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02346 Pumo-Chr2 50530698 50534633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02346 1 340 MYB Transcription Factor Family AT3G08500 47.838 1.50e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g02346 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02346 K09422 - gmx:100813660 558.525