Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02333 ATGTTGAAGGAAGGCACCAACAACGTTGTTGGTGGCAGCAACGGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCGCCATGCGTGCTCTACTGCCATGCAGACTCAGCATACCTCTGTCCATCGTGTGATGCTCGCGTCCACGCAGCTAACCGTGTGGCCTCACGGCACGAGCGTGTGTTGGTGTGCGAAGCGTGTGAGCGTGCTCCCGCGGCGTTTCTATGTAAAGCTGATGCTGCTTCTCTTTGCTCTTCCTGTGATGCTGACATTCACTCAGCAAACCCTCTCGCCAGCCGCCACCACCGCGTTCCCATCCTCCCCATCTCGGGTTCCCTCTTCAGGGAACCAGAACACGAACGCGACGTAGACGAATACGTAGCGTTCGTGAATGAGGTGGAAGAGGAGGAGGAAGAGGTTGTTGACGAGTATGAGGATGAGGTTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAGAATCATGACGAGGAGGAGAATGGTGATGATCAGACTTTTTTGTTTGGTGATGAGTATTTGGACAACCTTGTGGATTGTAACTCGTGTGGTCACAACAACAATCACTTTACCAACGTTTATCAGCACCAGCAGAATTACAACACTGTCCCTCAGAACTATGCAGTGGTTCCATTTCAGGTACCGCAGCATTTTCAACCGGGTTTGGAGTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCAATGGATGTTGGTGTGGTACCAGAATCAACAATAAGTGACATCTCAATGTCCCACTCAAAGTCACCAATAGGGACAAGTGACCTATTCCCTCCCCTTCCAATGCCTTCACATCTCACACCAATGGACAGAGAAGCAAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAGTTTGAGAAGAAAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAAACTAGACCCCGCATAAAGGGTCGATTTGCAAAGAGAACTGATGTAGAAGCTGAAGTGGACCAGATGTTCTCCACAGCACTATTCACTGAAGTTGGAGGTGGCATTTTTCCCTCTTTCTGA 1092 0.4936 MLKEGTNNVVGGSNGTWSRVCDTCRSAPCVLYCHADSAYLCPSCDARVHAANRVASRHERVLVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGSLFREPEHERDVDEYVAFVNEVEEEEEEVVDEYEDEVEAASWLLPHPVKNHDEEENGDDQTFLFGDEYLDNLVDCNSCGHNNNHFTNVYQHQQNYNTVPQNYAVVPFQVPQHFQPGLEFDSSKAGFSYDGSLSQSVSVSSMDVGVVPESTISDISMSHSKSPIGTSDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTALFTEVGGGIFPSF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02333 363 Pfam CCT motif 294 336 IPR010402 GO:0005515
Pumo2g02333 363 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Pumo2g02333 363 CDD Bbox1_BBX-like 63 106 - -
Pumo2g02333 363 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 350 IPR045281 GO:0009909
Pumo2g02333 363 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Pumo2g02333 363 Pfam B-box zinc finger 62 106 IPR000315 GO:0008270
Pumo2g02333 363 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Pumo2g02333 363 Coils Coil 127 150 - -
Pumo2g02333 363 CDD Bbox1_BBX-like 20 63 - -
Pumo2g02333 363 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Pumo2g02333 363 SMART bboxneu5 16 63 IPR000315 GO:0008270
Pumo2g02333 363 SMART bboxneu5 64 106 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02333 Pumo-Chr2 50051863 50053976 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02333 1 363 C2C2-CO-like Transcription Factor Family AT3G02380 54.856 5.49e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo2g02333 zf-B_box 9.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02333 - K12135 gmx:100782635 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g02333 2 50051863 50053976 Pumo5g00637 5 12360902 12363702 PCT