Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02330 ATGTCAACGAAGCTGGGCACCCTTAATAACTCCTCACGTGCCTGTGACACGTGCCGCTCCGCCGCGTGCGCCGTGTACTGCCTTACTGACTCGTTGTTTCTGTGCTCGTGCTGTGACGCCACCATCCACGTGGCGTCACAGCACCAGCACGAGCGCGTGAGGGTGTGCGACGCATGCGGGCGTGCACCCTCAGCGTATCTATGCAATGCAGACAACGCGTTTCTGTGCTCTTCCTGCGACAATGAAATCCACTCCGCGAACCCTCTAGCTACCCGCCACCAGCGCGTGCCAGTTCTCCCCATTCATGTGGACGACGATGATGACGTGGCAGAAGCTGCTTCGTGGTTGGTTTTGAACCCTGAGAAAAATGATGGTGATGATGGGTTATTGTTGTTTGGTGGGAAGGTTGATGAAAATGAGTATTTGGAGCTTGTGGAGGATTGTAATTCGTGTGGTGAGACTGAGAATGGGTTCTGTGATGTTCGGTTTGATGATTGCAGTGTGCCTCACAAAAGCTATGATGTTCAGATGCAACACCAGCAGGTAGAGCGTTTTCAACTGGGTGTCGAGTTTGACTCCTCAAAACCTGCCTATGGTTCCGTGACTGTGAGTCAAAGTGTCTCAATCTCATCAACGGAGGTTAACAGTGTACCAGAATCAACACTCAGCGATCAACTCTCAATTTCTGATTCAAATCCGGCAATAGGCACAACAATATTAGACCTATCTTCTGGACCTCCCATTTTGATGCCTTCCTATCTTACATACAGAGAATCAAGAGTTCAAAGATATAAAGAGAAAAAGAAGAAAAGAAAGTTTGAAAAGAAAATCAGATATGCCTCGAGGAAGGCCTATGCAGAAATTAGACCCCGTATACAAGGTCGATTTGCAAAGAGAAATAATAATGTAGAAGCTGAAACGGACCAAATGTTCTCCTCGACTTTAATTACAGAAGCAGGAGGATATATATAG 972 0.4733 MSTKLGTLNNSSRACDTCRSAACAVYCLTDSLFLCSCCDATIHVASQHQHERVRVCDACGRAPSAYLCNADNAFLCSSCDNEIHSANPLATRHQRVPVLPIHVDDDDDVAEAASWLVLNPEKNDGDDGLLLFGGKVDENEYLELVEDCNSCGETENGFCDVRFDDCSVPHKSYDVQMQHQQVERFQLGVEFDSSKPAYGSVTVSQSVSISSTEVNSVPESTLSDQLSISDSNPAIGTTILDLSSGPPILMPSYLTYRESRVQRYKEKKKKRKFEKKIRYASRKAYAEIRPRIQGRFAKRNNNVEAETDQMFSSTLITEAGGYI 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02330 323 SMART bboxneu5 54 98 IPR000315 GO:0008270
Pumo2g02330 323 SMART bboxneu5 10 53 IPR000315 GO:0008270
Pumo2g02330 323 Pfam B-box zinc finger 53 98 IPR000315 GO:0008270
Pumo2g02330 323 CDD Bbox1_BBX-like 14 55 - -
Pumo2g02330 323 CDD Bbox1_BBX-like 55 98 - -
Pumo2g02330 323 ProSiteProfiles Zinc finger B-box type profile. 10 55 IPR000315 GO:0008270
Pumo2g02330 323 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 314 IPR045281 GO:0009909
Pumo2g02330 323 ProSiteProfiles CCT domain profile. 257 299 IPR010402 GO:0005515
Pumo2g02330 323 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Pumo2g02330 323 Pfam CCT motif 257 299 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02330 Pumo-Chr2 50021799 50024147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02330 12 320 C2C2-CO-like Transcription Factor Family AT3G02380 46.176 2.08e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo2g02330 zf-B_box 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02330 - K12135 cave:132180912 278.1