Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02321 ATGGAAGCAGAAGAACACTTTCAACTTCCTCATCATTCTCACGATTCTCCGGTTCAAGGCATGGAACGAGTGGTGGCAACGGTGAGCGGCTACCACGGCTCCGAGCGATTCAATCTCATAAAGTTGATTTCACATGCTGGCGCCAATTATGTTGGCGCAATGTCAAAATCGATAACTCATCTGGTGTGTTGGAAATTTGAAGGAAAGAAATATGATATTGCACGGAAGTTTAGAATACTTGTAGTTAACCACCGATGGGTTGAGGACTGCATAAAGGAAGGAAGGCGTGTTCTAGAAGATACTTATACTTGGCAAAGTGGACATGAAGTAGGGCCATTGTTACTGGAAGTTCCCCTCATTGTTCAAGCCAATAGCTTGACAAAGAAAAAATTGGTCAGTGACAAGTTACATGATACTGGGTCTGAAAGACAAAATACCAACTTCAGTTCTGGAGCTTCTGGAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAGGAAAGGAAAAAGGCATATTTGCAATGGTAAGGGAGTTAGTACTCTGGCTGGACCTTCTCGTAAAGGAAGAAGACTTGCGAGAAATCTTCTTGATGAAGTGGTGTTGGATCCTTCAATTTTGGATTTAAGCCCAGATGACCACCTTTTCAGAATGGATAGACTACAAACTGATTCTGCAGCTACCTCTAGCCTTTCTGGTGGTGTCAATAATCAAAATAATGAAGAACCTAATGCTGGATTAAGTAATCAAAGTAGAACTATCAATGGTGGTTCAGATGATATTGAACAGATCAAAGATTCAAGTCATATATCTACACCTAGAAATTCAACTTTATTTATTGAAGATCCTTTACCTATGCCACAAACATCAATAGATTTATGTTCCAGGGATGATGAAAAGTTCATAGATGGTGATCAGGATGATAATGTTGCTGGCTTACCCACTTCAACAGAGATGTCATGCGTTATATGTTTCACAGATTTCAGCTCAACACGGGGTATTCTGCCTTGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTGATCATAGGACTTCGATGGGAAAACCATCGACCTGCCCTTTGTGCAAGGCAAGTTTTGTGATGATTAAGAAAGTTGAGCATGCAGTCACCGCTGATCAAAAAGTATACTCCCAGACAATCCCATGTGACAATTCAACCTCAGTTATTTTTGTCCCCATGGATAAAATATTACCAAATAATATCTTTGAGTCTGCACAGTCAAATGCTTGCGTAGTTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGCGATGTTTGCCAGATTCGAAAGATCCATTCCTATTGCATGGACCCTCCTCTGCGGCCATGGATATGCACTCACTGCAAGGAACTTCGGATGCTTTATCGTACTAATCACTCATATTAG 1458 0.4095 MEAEEHFQLPHHSHDSPVQGMERVVATVSGYHGSERFNLIKLISHAGANYVGAMSKSITHLVCWKFEGKKYDIARKFRILVVNHRWVEDCIKEGRRVLEDTYTWQSGHEVGPLLLEVPLIVQANSLTKKKLVSDKLHDTGSERQNTNFSSGASGTYVLEDSCLMKKHEESSSYSSRLSRKGKRHICNGKGVSTLAGPSRKGRRLARNLLDEVVLDPSILDLSPDDHLFRMDRLQTDSAATSSLSGGVNNQNNEEPNAGLSNQSRTINGGSDDIEQIKDSSHISTPRNSTLFIEDPLPMPQTSIDLCSRDDEKFIDGDQDDNVAGLPTSTEMSCVICFTDFSSTRGILPCGHRFCFPCIQSWVDHRTSMGKPSTCPLCKASFVMIKKVEHAVTADQKVYSQTIPCDNSTSVIFVPMDKILPNNIFESAQSNACVVCRGREPEDLLESCDVCQIRKIHSYCMDPPLRPWICTHCKELRMLYRTNHSY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02321 485 MobiDBLite consensus disorder prediction 239 273 - -
Pumo2g02321 485 Pfam Zinc finger, C3HC4 type (RING finger) 333 377 IPR018957 GO:0046872
Pumo2g02321 485 ProSiteProfiles Zinc finger RING-type profile. 333 378 IPR001841 -
Pumo2g02321 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 484 IPR013083 -
Pumo2g02321 485 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
Pumo2g02321 485 PANTHER F5A8.9 PROTEIN 165 482 - -
Pumo2g02321 485 MobiDBLite consensus disorder prediction 239 294 - -
Pumo2g02321 485 Pfam twin BRCT domain 24 86 IPR001357 -
Pumo2g02321 485 Gene3D BRCT domain 17 103 IPR036420 -
Pumo2g02321 485 SUPERFAMILY FYVE/PHD zinc finger 428 475 IPR011011 -
Pumo2g02321 485 ProSitePatterns Zinc finger RING-type signature. 349 358 IPR017907 -
Pumo2g02321 485 SMART BRCT_7 18 94 IPR001357 -
Pumo2g02321 485 SMART ring_2 333 377 IPR001841 -
Pumo2g02321 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 403 IPR013083 -
Pumo2g02321 485 SUPERFAMILY RING/U-box 328 384 - -
Pumo2g02321 485 SUPERFAMILY BRCT domain 17 105 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02321 Pumo-Chr2 49666400 49672381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02321 58 110 Core DNA Replication Machinery Family AT4G02110 50.000 7.96e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02321 - - gmx:100815034 837.025