Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02296 ATGTTCCCTTACAGTTCCAACCCCTACCCTTCCTTCCCTTCATCATCTTCTTCTTCATACCCTCATTTTCCTTTCCTCAACCTTGAGAATGCTTCTGCAGGCAACACCCTTCTTCATGATCCACTTTCTGTGCCTTACATACCAACTCATCATAACCCTTCAAGCATCCAAGAAGCACTGAACAGTTTGCCAGTCACAGATCATAACTGTGGTGGCGGCGGCGGCGGCGGCGGCGGTGGCGGTTCTGCAATGACCAAACCTGACCCAAGTGGTGCTGCTCACTATGGCATTTCTTGTTTCCTCACAAAGAAGCCAGCTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGTCTGAGGGACCGAAGGGTGAGGTTGTCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGAGCTGGCAAGGAGCAAGCACAGCAACAACAGTGAAGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGAGTGTGATGATGACTGTGAAGTGGTTTCTGAAATCAAACAGAAACAACAACAACTCATCACTTGTGATGCTGCTGCTGCTACTCCACACAACCTACAACAAGGGTTGGATTCAAGTGATAACAAGTCACCAACATTGCTGGCTGCAAGGGAGAGGATGAAGTTGAAAAGGACACAGAAGGAACCTGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATTATTATGTGCAATGTTAACACCAACAACACAGGGAGGGTGCAACAAGACTTTAAGAAAAAGTGCCCTGCAATTGAAAATAACCACTCTCAAATCATGCATCAATCAAGGTCACCTACTCACCCTCACCACCTTGTGGGAAGTGATGCTCCTAGAGATGACTTCAACGTTATCGAGGAATCCATTGTGATCAAGAGAAAGTTGAAGCCCTCGTTGATGTCCTCTTCTCATCATCATCATCACCAAAACCTTGTGATGCCTAAGGAACCACCAAGTTTCAACAACAACAACAACAGTGAGTACCACCCCTTCTCCAATTTGTCTCCAAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTCTGTGCCATAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTAA 1251 0.4644 MFPYSSNPYPSFPSSSSSSYPHFPFLNLENASAGNTLLHDPLSVPYIPTHHNPSSIQEALNSLPVTDHNCGGGGGGGGGGGSAMTKPDPSGAAHYGISCFLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKHSNNSEEGAKSFSSSSECDDDCEVVSEIKQKQQQLITCDAAAATPHNLQQGLDSSDNKSPTLLAARERMKLKRTQKEPAKMKESREKARARARERTSNKIIMCNVNTNNTGRVQQDFKKKCPAIENNHSQIMHQSRSPTHPHHLVGSDAPRDDFNVIEESIVIKRKLKPSLMSSSHHHHHQNLVMPKEPPSFNNNNNSEYHPFSNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02296 416 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 83 365 IPR005333 GO:0003700
Pumo2g02296 416 ProSiteProfiles TCP domain profile. 107 165 IPR017887 -
Pumo2g02296 416 MobiDBLite consensus disorder prediction 240 263 - -
Pumo2g02296 416 MobiDBLite consensus disorder prediction 167 186 - -
Pumo2g02296 416 ProSiteProfiles R domain profile. 251 268 IPR017888 -
Pumo2g02296 416 MobiDBLite consensus disorder prediction 66 87 - -
Pumo2g02296 416 Pfam TCP family transcription factor 106 269 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02296 Pumo-Chr2 48998140 48999521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02296 102 176 TCP Transcription Factor Family AT1G67260 70.667 8.50e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo2g02296 TCP 1.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02296 - - gmx:100801549 652.899