Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02276 ATGGATGCAGAAGCATGCCTGAAGGTGAAGACTGAAATGTGTATGAGATTCAAGAGGGGCGTGTGTGTTCATGGATCCATATGCCGCTACGCATACAGCATTGCGGAGCTAATGAGACACCAACCCAAACTATGCAGATTCTTCCTTCACAACAAACACTGCCCGTATGGACGCAACTGTCGTTTCCCTCACTCAACCACACTGCCACCTTTCAACCCAAACCCACAACCTCTTCAACCAGAATCCAATAGAATGCATACTACTTCTGCAGCTGCTTCAACTTCAAGTGATGGCTACTCTTCTGCAGAACACAGTATAATGCAAACTTCTGCTGCTGCTGCTATTACAAATGCCTCAACTAGCTCTTCGCATAAGAATGAACCATCATATCATGTGAAGTTCATATTCAAGAACAACGATCTACGAAAGATCAATCGCATCTATGGTGATTGGATTGATTGA 462 0.4416 MDAEACLKVKTEMCMRFKRGVCVHGSICRYAYSIAELMRHQPKLCRFFLHNKHCPYGRNCRFPHSTTLPPFNPNPQPLQPESNRMHTTSAAASTSSDGYSSAEHSIMQTSAAAAITNASTSSSHKNEPSYHVKFIFKNNDLRKINRIYGDWID 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02276 153 SMART c3hfinal6 8 34 IPR000571 GO:0046872
Pumo2g02276 153 SMART c3hfinal6 41 66 IPR000571 GO:0046872
Pumo2g02276 153 ProSiteProfiles Zinc finger C3H1-type profile. 8 35 IPR000571 GO:0046872
Pumo2g02276 153 MobiDBLite consensus disorder prediction 78 100 - -
Pumo2g02276 153 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Pumo2g02276 153 MobiDBLite consensus disorder prediction 68 100 - -
Pumo2g02276 153 Gene3D - 7 39 - -
Pumo2g02276 153 Gene3D - 40 67 - -
Pumo2g02276 153 PANTHER CCCH ZINC FINGER/TIS11-RELATED 9 124 IPR045877 GO:0003729
Pumo2g02276 153 SUPERFAMILY CCCH zinc finger 37 66 IPR036855 GO:0046872
Pumo2g02276 153 SUPERFAMILY CCCH zinc finger 7 37 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02276 Pumo-Chr2 48312144 48313615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02276 9 65 C3H Transcription Factor Family AT1G68200 37.500 1.14e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo2g02276 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02276 - K18753 gmx:102663279 174.096