Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo2g02275 | ATGGAGGCAGAAGCATGGTCATCATCATTCCCACAAACTCATGATCATTTGAACAAGTCCAAAAGAGAATCCAAATCGGCTGCCTTTAATCATAATCGTAATTATCATCGTAGATTGAAGGTCATGAAGACGGAAATGTGTAAGAGATTCACGAGGGGCGAGTGCATTCATGGATCCATATGCCGCTACGCACACAGCATTGCGGAGCTGATGAGACACCCACCCAAACTATGCAGATTCTTCCTTCAAAACAAACACTGCCCGTATGGACGCAACTGTCGTTTCCCTCACTCAACCACACTGCCACCTTTCAACCCAAACCCACAACCTCTTCAACCAGAATCCAATAGAATGCATACTACTTCTGCAGCTGCTTCAACTTCAAGTGATGGCTACTCTTCTGCAGAACACAGTATAATGCAAACTTCTGCTGCTGCTGCTACAAACGCCTCAACTAGCTCTTCCCATAAGAATGAACCGTCATATCCTGTGAAGTTCATATTCAAGAACAATGATGTACGAAAGATCAATCGCATCTATGGTGATTGGATTGATTGA | 558 | 0.4391 | MEAEAWSSSFPQTHDHLNKSKRESKSAAFNHNRNYHRRLKVMKTEMCKRFTRGECIHGSICRYAHSIAELMRHPPKLCRFFLQNKHCPYGRNCRFPHSTTLPPFNPNPQPLQPESNRMHTTSAAASTSSDGYSSAEHSIMQTSAAAATNASTSSSHKNEPSYPVKFIFKNNDVRKINRIYGDWID | 185 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo2g02275 | 185 | Pfam | CCCH-type zinc finger | 76 | 97 | IPR041367 | - | |
Pumo2g02275 | 185 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 27 | 160 | IPR045877 | GO:0003729 | |
Pumo2g02275 | 185 | MobiDBLite | consensus disorder prediction | 15 | 30 | - | - | |
Pumo2g02275 | 185 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Pumo2g02275 | 185 | ProSiteProfiles | Zinc finger C3H1-type profile. | 72 | 100 | IPR000571 | GO:0046872 | |
Pumo2g02275 | 185 | SUPERFAMILY | CCCH zinc finger | 40 | 71 | IPR036855 | GO:0046872 | |
Pumo2g02275 | 185 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 43 | 66 | IPR000571 | GO:0046872 | |
Pumo2g02275 | 185 | SUPERFAMILY | CCCH zinc finger | 71 | 99 | IPR036855 | GO:0046872 | |
Pumo2g02275 | 185 | MobiDBLite | consensus disorder prediction | 111 | 137 | - | - | |
Pumo2g02275 | 185 | Gene3D | - | 75 | 100 | - | - | |
Pumo2g02275 | 185 | Gene3D | - | 38 | 73 | - | - | |
Pumo2g02275 | 185 | ProSiteProfiles | Zinc finger C3H1-type profile. | 42 | 68 | IPR000571 | GO:0046872 | |
Pumo2g02275 | 185 | SMART | c3hfinal6 | 74 | 99 | IPR000571 | GO:0046872 | |
Pumo2g02275 | 185 | SMART | c3hfinal6 | 43 | 67 | IPR000571 | GO:0046872 | |
Pumo2g02275 | 185 | MobiDBLite | consensus disorder prediction | 102 | 137 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo2g02275 | Pumo-Chr2 | 48299600 | 48306783 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo2g02275 | 41 | 100 | C3H Transcription Factor Family | AT1G68200 | 40.299 | 1.09e-09 | 54.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Pumo2g02275 | zf-CCCH | 7.8e-06 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo2g02275 | - | - | gmx:102663279 | 176.022 |