Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02275 ATGGAGGCAGAAGCATGGTCATCATCATTCCCACAAACTCATGATCATTTGAACAAGTCCAAAAGAGAATCCAAATCGGCTGCCTTTAATCATAATCGTAATTATCATCGTAGATTGAAGGTCATGAAGACGGAAATGTGTAAGAGATTCACGAGGGGCGAGTGCATTCATGGATCCATATGCCGCTACGCACACAGCATTGCGGAGCTGATGAGACACCCACCCAAACTATGCAGATTCTTCCTTCAAAACAAACACTGCCCGTATGGACGCAACTGTCGTTTCCCTCACTCAACCACACTGCCACCTTTCAACCCAAACCCACAACCTCTTCAACCAGAATCCAATAGAATGCATACTACTTCTGCAGCTGCTTCAACTTCAAGTGATGGCTACTCTTCTGCAGAACACAGTATAATGCAAACTTCTGCTGCTGCTGCTACAAACGCCTCAACTAGCTCTTCCCATAAGAATGAACCGTCATATCCTGTGAAGTTCATATTCAAGAACAATGATGTACGAAAGATCAATCGCATCTATGGTGATTGGATTGATTGA 558 0.4391 MEAEAWSSSFPQTHDHLNKSKRESKSAAFNHNRNYHRRLKVMKTEMCKRFTRGECIHGSICRYAHSIAELMRHPPKLCRFFLQNKHCPYGRNCRFPHSTTLPPFNPNPQPLQPESNRMHTTSAAASTSSDGYSSAEHSIMQTSAAAATNASTSSSHKNEPSYPVKFIFKNNDVRKINRIYGDWID 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02275 185 Pfam CCCH-type zinc finger 76 97 IPR041367 -
Pumo2g02275 185 PANTHER CCCH ZINC FINGER/TIS11-RELATED 27 160 IPR045877 GO:0003729
Pumo2g02275 185 MobiDBLite consensus disorder prediction 15 30 - -
Pumo2g02275 185 MobiDBLite consensus disorder prediction 1 32 - -
Pumo2g02275 185 ProSiteProfiles Zinc finger C3H1-type profile. 72 100 IPR000571 GO:0046872
Pumo2g02275 185 SUPERFAMILY CCCH zinc finger 40 71 IPR036855 GO:0046872
Pumo2g02275 185 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 66 IPR000571 GO:0046872
Pumo2g02275 185 SUPERFAMILY CCCH zinc finger 71 99 IPR036855 GO:0046872
Pumo2g02275 185 MobiDBLite consensus disorder prediction 111 137 - -
Pumo2g02275 185 Gene3D - 75 100 - -
Pumo2g02275 185 Gene3D - 38 73 - -
Pumo2g02275 185 ProSiteProfiles Zinc finger C3H1-type profile. 42 68 IPR000571 GO:0046872
Pumo2g02275 185 SMART c3hfinal6 74 99 IPR000571 GO:0046872
Pumo2g02275 185 SMART c3hfinal6 43 67 IPR000571 GO:0046872
Pumo2g02275 185 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02275 Pumo-Chr2 48299600 48306783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02275 41 100 C3H Transcription Factor Family AT1G68200 40.299 1.09e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo2g02275 zf-CCCH 7.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02275 - - gmx:102663279 176.022