Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02255 ATGGCCAACACTGAGGACAAGGTTTCCTTTCAATTCCCAGCAGGTCTTAGGGTCCTTGCGGTTGATGATGACCCAAGTATGATTGAAATCATAAAGAAAATGTGTTTTCACTGCCATTATCGCGTTACTACATTCTCTGATGCCCCACTTGCTTTGAATTATGTACGGGAGAAAAAAGATTGCATTGATGTGATACTCATTGAAGTTCACATGCCAAATATGGATGGCTATGAATTTCTTCAGCATGTCACCAAGGAAATTAATGTTCCTGTTATCATGATGTCTCATGATGATGCTACGAGGGCTGTGATGAAGGCTATTACACATGGGGCATGTGATTATTGGATCAAGCCTTTGCATGAGACCCAATTCAAGGTTATGTGGAAGCATGTTGCTATTAAAGCCTGGAATGAAAAGAAGCTACAAAAGAAAGATGATTCTGAATTTGCTTCTTCTGTTCTTGATACAACAGTGATGGACCCAAGAAAGAACAGTTCCAATTGCAAAGAATCTGATGATTGTTATGCTTATGCACCCCCAGCAAAGAAGCCCCGTCTAGTATGGCAAGGAGAACTGCATCAACAATTTGTCAAGGCTGTGAATCAAGTTGGGCTTGACAGGGCACAGCCAAAGAGGATTCTTGAAGTGATGAATATTCCTGGTTTGACAAAAGAGCATGTTGCTAGTCATTTGCAGCAGAATGAGATTCCATTGCCAAACAGTATAGGAGGTGCACCAGGAAGATTTGATTTGCTAGCTTTTGGTGCAAGTAGCCATGTTCCTTATGATGCATTATCAAATTCATTCAATCAACTTTCAGCCCATCTTGCCTGGCAGTTATGA 843 0.4104 MANTEDKVSFQFPAGLRVLAVDDDPSMIEIIKKMCFHCHYRVTTFSDAPLALNYVREKKDCIDVILIEVHMPNMDGYEFLQHVTKEINVPVIMMSHDDATRAVMKAITHGACDYWIKPLHETQFKVMWKHVAIKAWNEKKLQKKDDSEFASSVLDTTVMDPRKNSSNCKESDDCYAYAPPAKKPRLVWQGELHQQFVKAVNQVGLDRAQPKRILEVMNIPGLTKEHVASHLQQNEIPLPNSIGGAPGRFDLLAFGASSHVPYDALSNSFNQLSAHLAWQL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02255 280 NCBIfam myb-like DNA-binding domain, SHAQKYF class 183 233 IPR006447 GO:0003677
Pumo2g02255 280 ProSiteProfiles Response regulatory domain profile. 17 132 IPR001789 GO:0000160
Pumo2g02255 280 Pfam Response regulator receiver domain 18 124 IPR001789 GO:0000160
Pumo2g02255 280 SUPERFAMILY Homeodomain-like 181 233 IPR009057 -
Pumo2g02255 280 Gene3D - 180 238 - -
Pumo2g02255 280 FunFam Two-component response regulator 180 239 - -
Pumo2g02255 280 Pfam Myb-like DNA-binding domain 187 233 IPR001005 -
Pumo2g02255 280 CDD REC_typeB_ARR-like 18 132 - -
Pumo2g02255 280 Gene3D - 16 150 - -
Pumo2g02255 280 SUPERFAMILY CheY-like 15 132 IPR011006 -
Pumo2g02255 280 SMART REC_2 16 128 IPR001789 GO:0000160
Pumo2g02255 280 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 235 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02255 Pumo-Chr2 47881464 47882934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02255 12 221 Response Regulator Gene Family AT4G16110 42.857 6.19e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo2g02255 Response_reg 1.3e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02255 - - gsj:114399361 334.724