Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02235 ATGAACAATTTTGAGAAAGAGGCAACGTCATCGAATCTCAACATTAAGGACAAGCATACGCTCCAATCTAATGGCTTCAAAGCTCCATCATCCCCAAAGCAACCTTTTTTTATTGGTGTTGCTGGTGGAACTGCATCTGGAAAAACAACTGTATGTAACATGATAAATACTCAACTTCGTGATCAACGCGTTGTCCTCATTACTCAAGACTCATTTTATCACTCATTGAGTGAGAAGATGCTACAGAAAGTTAATGAGTACAACTTTGATCATCCTGATGCCTTTGATATGAAGCTTTTGCTTTCAACAATGGAGAAATTAAAATGTGGACAACCTGTTACCATACCAAATTATGATTTCAACACCCATAAAAGAATTGAAGCTGCACGTCAGGTTCACCCTGGAGATATCATAGTTTTAGAAGGGATATTAGTTCTTCACGATTCTGGTGTCCGTAATCTTTTGAACATGAAGATCTTTGTTGATGAAGATTCTGACGTGCGCCTTGCACGAAGAATGCAACGTCTTGCTATTGAGCGTGGGAGGAATATTGAGAATGCTCTAGACCAATATTCCAGGTTTGTAAAGCCAAGTTTTGAAGACTTCGTATTGCCAACTAAAAAGTATGCTGATATTATCATCCCAAGTGGAGGAGATAATGATGTTGCCATTGACTTAATAGTACAAAACATACGTATGAAGCTTGGCCAACATGATTTGTGTAAAATATATCCCAATATTTTTGTTATATTTTCAACATTTCAGATAAAGGGAATGCATACTCTTATCCGTGATGTTAAGACAACAAAGCATGACTTTGTCTTCTATTCAGATCGTCTTATTAGACTGGTTGTCGAGCATGGATTGGGTCACCTTCCTTTTTCTGAAAAGCAAGTGACAACACCAACAGGATCTGTATACTCTGGTGTTATTTTCTGTAGTAGGTTGTGCGGTGTATCAGTCATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGTTGTAAGGGAATCAAAATTGGTAAAATCCTTATTCATGGGCATGGCACAGATGGTCGACAGTTAATCTATGAGAAGCTACCGAAAGACATTGCAAGTCGTCATGTGTTGCTACTCGATCCAGTTTTGGCCACAGGAAACTCTGCAGTCAAAGCTATCTCTCTGCTTCTCAAGAAAGGTGTACCAGAATCTAACATTATATTTCTAAATTTAGTAGCAGCACCACAAGGAATAAATGCAGTTTGTGAGAGATTTCCAATGATGAAACTTGTGACATCAGAGATTGATGCATCACTGAATGAGAATTCTCATGTGATCCCTGGCTTAGGAGAGTTTGGCGATCGTTATTTTGCCACTGATGATTAA 1368 0.3838 MNNFEKEATSSNLNIKDKHTLQSNGFKAPSSPKQPFFIGVAGGTASGKTTVCNMINTQLRDQRVVLITQDSFYHSLSEKMLQKVNEYNFDHPDAFDMKLLLSTMEKLKCGQPVTIPNYDFNTHKRIEAARQVHPGDIIVLEGILVLHDSGVRNLLNMKIFVDEDSDVRLARRMQRLAIERGRNIENALDQYSRFVKPSFEDFVLPTKKYADIIIPSGGDNDVAIDLIVQNIRMKLGQHDLCKIYPNIFVIFSTFQIKGMHTLIRDVKTTKHDFVFYSDRLIRLVVEHGLGHLPFSEKQVTTPTGSVYSGVIFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTDGRQLIYEKLPKDIASRHVLLLDPVLATGNSAVKAISLLLKKGVPESNIIFLNLVAAPQGINAVCERFPMMKLVTSEIDASLNENSHVIPGLGEFGDRYFATDD 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02235 455 SUPERFAMILY PRTase-like 237 453 IPR029057 -
Pumo2g02235 455 CDD PRTases_typeI 316 426 IPR000836 -
Pumo2g02235 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 227 IPR027417 -
Pumo2g02235 455 PANTHER URIDINE KINASE 27 364 - -
Pumo2g02235 455 CDD UMPK 37 232 IPR000764 -
Pumo2g02235 455 Gene3D - 31 237 IPR027417 -
Pumo2g02235 455 Gene3D - 238 453 IPR029057 -
Pumo2g02235 455 PRINTS Uridine kinase signature 110 125 - -
Pumo2g02235 455 PRINTS Uridine kinase signature 65 76 - -
Pumo2g02235 455 PRINTS Uridine kinase signature 180 191 - -
Pumo2g02235 455 PRINTS Uridine kinase signature 35 52 - -
Pumo2g02235 455 PRINTS Uridine kinase signature 202 215 - -
Pumo2g02235 455 PRINTS Uridine kinase signature 166 176 - -
Pumo2g02235 455 FunFam Uridine kinase 238 453 - -
Pumo2g02235 455 NCBIfam uridine kinase 35 234 IPR000764 -
Pumo2g02235 455 FunFam Uridine kinase 31 237 - -
Pumo2g02235 455 Pfam Phosphoribulokinase / Uridine kinase family 37 223 IPR006083 GO:0005524|GO:0016301
Pumo2g02235 455 Pfam Uracil phosphoribosyltransferase 252 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02235 Pumo-Chr2 47171209 47186557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02235 29 455 PRT Gene Family AT5G40870 71.729 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02235 K00876 - gmx:100803453 745.732