Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02232 ATGGCCACATTCCCCACTGAGGAGAAGGTTTCCTTTCAATTCCCAGAAGGTCTTAGGGTCCTTGCAGTTGATGAAGACCCCACCATTCTTGAATTCATCAAGCAAATGAGTTTTAGATGCCACTATTGCACTACCACATTCTCTGATGCCCCACTTGCTTTGAATTATGTTCGGGAGAAAAAAGATTGCATTGATGTGATACTCGTTGAAGTTCACATGCCAAATATGGATGGCTATGAGTTCCTTCAGCATGTCACCAACGAAACTAATATTCCTGTTATAATGATGTCTCTTGATGATGCTACGAGTACTGTGATGAAGGCTATTAGAGGTGGAGCTTGTGACTATTGGACTAAGCCTTTAAGTGAGAACGAATTCAAGATTATCTGGAAGCATGTTGCTAGGAAACTCTGGAATGAATTTGTTGCTTCTTCTGTTCTTGATACAATAGTGAGGGGCCCAGAAAAGATCGGTTCGAATTTCAAAGATTCTGATTCCGATGAACCGGGCGATTCTTTTGCACCCCAAGCAAAGAAGCAACGTGTAATATGGTCACAAGAATTGCATCACCAATTTGTCAATGCTGTGATGCAAATTGGGCTTGATAAGGCACAGCCAAAGAGGATTCTTGCAGTGATGAATAACCCTGGTTTGACAAGAGAGCAAGTAGCTAGTCATTTGCAGAAATATAAGCATGACCTGTTGAATACATCTAATGGAGTGACACTGCAACAGAATGAGAAGGCATTGCCAAACAGCATAGAATCCAGGGGCAGAGTAGATGCATATGAAATGTTAGACTTAACAGCTTTTGGTGATACTAACCATGTTCCCTATGCAGCTCTTCACCCTGAGGAGGTCGCAAGTAACTTGATGCCACATGAAGACCAAAGGCCTAACCATTCCCGTGAAGATCAAGAGTAG 924 0.4232 MATFPTEEKVSFQFPEGLRVLAVDEDPTILEFIKQMSFRCHYCTTTFSDAPLALNYVREKKDCIDVILVEVHMPNMDGYEFLQHVTNETNIPVIMMSLDDATSTVMKAIRGGACDYWTKPLSENEFKIIWKHVARKLWNEFVASSVLDTIVRGPEKIGSNFKDSDSDEPGDSFAPQAKKQRVIWSQELHHQFVNAVMQIGLDKAQPKRILAVMNNPGLTREQVASHLQKYKHDLLNTSNGVTLQQNEKALPNSIESRGRVDAYEMLDLTAFGDTNHVPYAALHPEEVASNLMPHEDQRPNHSREDQE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02232 307 SUPERFAMILY Homeodomain-like 177 232 IPR009057 -
Pumo2g02232 307 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pumo2g02232 307 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 247 IPR045279 GO:0009736
Pumo2g02232 307 CDD REC_typeB_ARR-like 20 134 - -
Pumo2g02232 307 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Pumo2g02232 307 FunFam Two-component response regulator 175 238 - -
Pumo2g02232 307 Gene3D - 176 236 - -
Pumo2g02232 307 SUPERFAMILY CheY-like 16 136 IPR011006 -
Pumo2g02232 307 Gene3D - 18 142 - -
Pumo2g02232 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 179 231 IPR006447 GO:0003677
Pumo2g02232 307 SMART REC_2 18 130 IPR001789 GO:0000160
Pumo2g02232 307 Pfam Myb-like DNA-binding domain 184 231 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02232 Pumo-Chr2 47115874 47117356 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02232 3 250 Response Regulator Gene Family AT4G31920 39.535 3.29e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo2g02232 Response_reg 2e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02232 - K14491 gmx:102662429 323.553