Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02230 ATGGCCACATTCCCCACTGAGGAGAAGGTTTCCTTTCAATTCCCAGAAGGTCTTAGGGTCCTTGCAGTTGATGAAGACCCCACCATTCTTGAATTCATCAAGCAAATGAGTTTTAGATGCCACTATTGCACTACCACATTCTCTGATGCCCCACTTGCTTTGAATTATGTTCGGGAGAAAAAAGATTGCATTGATGTGATACTCGTTGAAGTTCACATGCCAAGTATGGATGGCTATGAGTTCCTTCAGCATGTCACCAACGAAACTAATATTCCTGTTATAATGATGTCTCTTGATGATGCTACGAGTACTGTGATGAAGGCTATTAGAGGTGGAGCTTGTGACTATTGGACTAAGCCTTTAAGTGAGAACGAATTCAAGATTATCTGGAAGCATGTTGCTAGGAAACTCTGGAATGAATATAAGCTACCAATACAAGAGGATTCTGAATTTGTTGCTTCTTCTGTTCTTGATACAATAGTGAGGGGCCCAGAAAAGATCGGTTCGAATTTCAAAGATTCTGATTCCGATGAACCGGGCGATTCTTTTGCACCCCAAGCAAAGAAGCAACGTGTAATATGGTCACAAGAATTGCATCACCAATTTGTCAATGCTGTGATGCAAATTGGGCTTGATAAGGCACAGCCAAAGAGGATTCTTGCAGTGATGAATAACCCTGGTTTGACAAGAGAGCAAGTAGCTAGTCATTTGCAGAAATATAGGCATGACCTGTTGAATACATCTAATGGAGTGACACTGCAAGAGAATGAGAAGGCATTGCCAAACAGCATAGAATCCAGGGGCAGAGATGGAATGTTAGACTTAACAGCTTTTGGTGATACTAACCATGTTCCCTATGCAGCTCTTCACCCTGAGGAGGTCGCAAGTAACTTGATGCCACATGAAGACCAAAGGCCTAACCATTCCCGTGAAGATCAAGAGTAG 945 0.4243 MATFPTEEKVSFQFPEGLRVLAVDEDPTILEFIKQMSFRCHYCTTTFSDAPLALNYVREKKDCIDVILVEVHMPSMDGYEFLQHVTNETNIPVIMMSLDDATSTVMKAIRGGACDYWTKPLSENEFKIIWKHVARKLWNEYKLPIQEDSEFVASSVLDTIVRGPEKIGSNFKDSDSDEPGDSFAPQAKKQRVIWSQELHHQFVNAVMQIGLDKAQPKRILAVMNNPGLTREQVASHLQKYRHDLLNTSNGVTLQENEKALPNSIESRGRDGMLDLTAFGDTNHVPYAALHPEEVASNLMPHEDQRPNHSREDQE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02230 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 245 IPR017930 -
Pumo2g02230 314 SMART REC_2 18 130 IPR001789 GO:0000160
Pumo2g02230 314 SUPERFAMILY CheY-like 16 146 IPR011006 -
Pumo2g02230 314 CDD REC_typeB_ARR-like 20 134 - -
Pumo2g02230 314 FunFam Two-component response regulator 185 248 - -
Pumo2g02230 314 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 258 IPR045279 GO:0009736
Pumo2g02230 314 Gene3D - 186 246 - -
Pumo2g02230 314 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pumo2g02230 314 Pfam Myb-like DNA-binding domain 194 241 IPR001005 -
Pumo2g02230 314 NCBIfam myb-like DNA-binding domain, SHAQKYF class 189 242 IPR006447 GO:0003677
Pumo2g02230 314 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Pumo2g02230 314 SUPERFAMILY Homeodomain-like 187 243 IPR009057 -
Pumo2g02230 314 MobiDBLite consensus disorder prediction 168 184 - -
Pumo2g02230 314 Gene3D - 18 147 - -
Pumo2g02230 314 MobiDBLite consensus disorder prediction 167 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02230 Pumo-Chr2 47090769 47092249 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02230 3 260 Response Regulator Gene Family AT4G31920 38.931 4.31e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo2g02230 Response_reg 3.6e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02230 - K14491 gmx:102662429 335.109