Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02229 ATGCATAGAAAGAAAGGGCTAATTAACAAAATCTCTGAATTTTCCACCAAGTTTGGAGTTGAAGCCTGTTTGATTGTGTATGATGATGGCAATGGTGATGTTGGACCTGTGACTTGGCCTAAAGACCCTACATTGGTACACTCCATCATTCAAAAGCATTATGAGGTTCAATTAAAGAATGAGAGGCCTCAAGAGACCTTTGGTATTCAAGACTTTTTTGAGAATAGGAAGAGCATGGTTGAGGCTGAGATTTCCAAAGTGCAAAAACAGATTGCCAGCATCAAGTATCCAACTTGGGATCCAAGTTTCAGAAACATGGAAGAGGAGCAATTGAGGGCCTTCATTGCTCATGTGGATGCTAAGATAAGAGGTTGTGATCACAGAATTAACATGTTGAAAAACAAGCATCAGAGTTAA 417 0.3957 MHRKKGLINKISEFSTKFGVEACLIVYDDGNGDVGPVTWPKDPTLVHSIIQKHYEVQLKNERPQETFGIQDFFENRKSMVEAEISKVQKQIASIKYPTWDPSFRNMEEEQLRAFIAHVDAKIRGCDHRINMLKNKHQS 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02229 138 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 30 IPR002100 GO:0003677|GO:0046983
Pumo2g02229 138 Gene3D - 1 80 IPR036879 GO:0003677|GO:0046983
Pumo2g02229 138 SUPERFAMILY SRF-like 2 58 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02229 Pumo-Chr2 47084973 47085389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02229 3 128 Type I MADS-box Gene Family AT5G55690 33.077 4.15e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo2g02229 SRF-TF 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02229 - - gmx:100806649 231.491